Gm46411 Gene Detail

Summary

• Symbol
  Gm46411
• Name
  predicted gene, 46411

• Feature Type
  lncRNA gene
• IDs
  MGI:5826048
  NCBI Gene: 108168078
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:37978610-37983553 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826048	lncRNA gene	Chr13:37977358-37983766 (-)
129S1/SvImJ	ENSMUSG00200013676	lncRNA gene	Chr13:35203705-35209827 (-)
A/J	ENSMUSG00195033914	lncRNA gene	Chr13:34280041-34286162 (-)
AKR/J	ENSMUSG00220035906	lncRNA gene	Chr13:34049515-34055636 (-)
BALB/cJ	ENSMUSG00180008322	lncRNA gene	Chr13:34585647-34591768 (-)
C3H/HeJ	ENSMUSG00175015000	lncRNA gene	Chr13:34538318-34544439 (-)
C57BL/6NJ	ENSMUSG00215015139	lncRNA gene	Chr13:34707170-34713578 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035439	lncRNA gene	Chr13:34639476-34645900 (-)
CBA/J	ENSMUSG00210012007	lncRNA gene	Chr13:34546026-34552147 (-)
DBA/2J	ENSMUSG00185033342	lncRNA gene	Chr13:35372353-35378761 (-)
FVB/NJ	ENSMUSG00205038549	lncRNA gene	Chr13:34241982-34248103 (-)
JF1/MsJ	ENSUMUG00000034079	lncRNA gene	Chr13:34933825-34940215 (-)
LP/J	ENSMUSG00230016225	lncRNA gene	Chr13:44688937-44695058 (-)
NOD/ShiLtJ	ENSMUSG00190013547	lncRNA gene	Chr13:34768422-34774830 (-)
NZO/HlLtJ	ENSMUSG00225034802	lncRNA gene	Chr13:38481976-38488383 (-)
PWK/PhJ	ENSLUMG00010030710	lncRNA gene	Chr13:33762588-33768979 (-)
SPRET/EiJ	ENSMSPG00010011681	lncRNA gene	Chr13:33775180-33781503 (-)
WSB/EiJ	ENSIUOG00005029446	lncRNA gene	Chr13:33907729-33914144 (-)

Homology

• Gene Tree
  Gm46411
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000114370 (Evidence)
• NCBI Gene
  108168078

Representative Sequences			Length	Strain/Species
genomic	108168078	NCBI Gene Model | MGI Sequence Detail	4944	C57BL/6J
transcript	XR_003950624	RefSeq | MGI Sequence Detail	369	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;