Gm46392 Gene Detail

Summary

• Symbol
  Gm46392
• Name
  predicted gene, 46392

• Feature Type
  lncRNA gene
• IDs
  MGI:5826029
  NCBI Gene: 108168052
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:39045706-39092213 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1574 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826029	lncRNA gene	Chr13:38894030-39092231 (+)
129S1/SvImJ	ENSMUSG00200013719	lncRNA gene	Chr13:36126526-36336823 (+)
A/J	ENSMUSG00195036137	lncRNA gene	Chr13:35209540-35415413 (+)
AKR/J	ENSMUSG00220034912	lncRNA gene	Chr13:34980359-35186265 (+)
BALB/cJ	ENSMUSG00180008137	lncRNA gene	Chr13:35515090-35720937 (+)
C3H/HeJ	ENSMUSG00175014819	lncRNA gene	Chr13:35467665-35673508 (+)
C57BL/6NJ	ENSMUSG00215012730	lncRNA gene	Chr13:35628071-35826577 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037897	lncRNA gene	Chr13:35612453-35780236 (+)
CBA/J	ENSMUSG00210012015	lncRNA gene	Chr13:35475330-35681173 (+)
DBA/2J	ENSMUSG00185032962	lncRNA gene	Chr13:36293201-36491719 (+)
FVB/NJ	ENSMUSG00205034556	lncRNA gene	Chr13:35149480-35367020 (+)
JF1/MsJ	ENSUMUG00000033440	lncRNA gene	Chr13:35902053-36071194 (+)
LP/J	ENSMUSG00230017445	lncRNA gene	Chr13:45618230-45824072 (+)
NOD/ShiLtJ	ENSMUSG00190012108	lncRNA gene	Chr13:35689241-35887718 (+)
NZO/HlLtJ	ENSMUSG00225035667	lncRNA gene	Chr13:39402803-39607143 (+)
PWK/PhJ	ENSLUMG00010032191	lncRNA gene	Chr13:34715282-34890974 (+)
SPRET/EiJ	ENSMSPG00010011490	lncRNA gene	Chr13:34736773-34903953 (+)
WSB/EiJ	ENSIUOG00005028599	lncRNA gene	Chr13:34823406-35027746 (+)

Homology

• Gene Tree
  Gm46392
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000114767 (Evidence)
• NCBI Gene
  108168052

Representative Sequences			Length	Strain/Species
genomic	108168052	NCBI Gene Model | MGI Sequence Detail	46508	C57BL/6J
transcript	AK133313	GenBank | ENA | DDBJ | MGI Sequence Detail	4087	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;