Gm46388 Pseudogene Detail

Summary

• Symbol
  Gm46388
• Name
  predicted gene, 46388

• Feature Type
  pseudogene
• IDs
  MGI:5826025
  NCBI Gene: 108168047
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:80641128-80641603 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826025	pseudogene	Chr13:80634020-80641606 (+)
129S1/SvImJ	ENSMUSG00200006061	pseudogene	Chr13:75084000-75084475 (+)
A/J	ENSMUSG00195026230	pseudogene	Chr13:75590092-75590567 (+)
AKR/J	ENSMUSG00220016902	pseudogene	Chr13:74138949-74139424 (+)
BALB/cJ	ENSMUSG00180001463	pseudogene	Chr13:76092811-76093286 (+)
C3H/HeJ	ENSMUSG00175019145	pseudogene	Chr13:76343453-76343928 (+)
C57BL/6NJ	ENSMUSG00215002674	pseudogene	Chr13:76218666-76219141 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004240	pseudogene	Chr13:75593748-75594223 (+)
CBA/J	ENSMUSG00210005870	pseudogene	Chr13:75633419-75633894 (+)
DBA/2J	ENSMUSG00185019143	pseudogene	Chr13:79313783-79314258 (+)
FVB/NJ	ENSMUSG00205013025	pseudogene	Chr13:75070050-75070525 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230027076	pseudogene	Chr13:89294908-89295383 (+)
NOD/ShiLtJ	ENSMUSG00190008763	pseudogene	Chr13:75644653-75645128 (+)
NZO/HlLtJ	ENSMUSG00225030533	pseudogene	Chr13:81812657-81813132 (+)
PWK/PhJ	ENSLUMG00010014642	pseudogene	Chr13:75181262-75181741 (+)
SPRET/EiJ	ENSMSPG00010001463	pseudogene	Chr13:76087514-76087989 (+)
WSB/EiJ	ENSIUOG00005017597	pseudogene	Chr13:74926248-74926723 (+)

Homology

• Gene Tree
  Gm46388
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114528 (Evidence)
• NCBI Gene
  108168047

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114528	Ensembl Gene Model | MGI Sequence Detail	476	C57BL/6J
transcript	ENSMUST00000223876	Ensembl | MGI Sequence Detail	476	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;