Gm46378 Gene Detail

Summary

• Symbol
  Gm46378
• Name
  predicted gene, 46378
• Synonyms
  Gm40568

• Feature Type
  lncRNA gene
• IDs
  MGI:5826015
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:106047382-106054920 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  350 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826015	lncRNA gene	Chr12:106047382-106054920 (+)
129S1/SvImJ	ENSMUSG00200029200	lncRNA gene	Chr12:97821170-97825453 (+)
A/J	ENSMUSG00195022457	lncRNA gene	Chr12:100383243-100387530 (+)
AKR/J	ENSMUSG00220043017	lncRNA gene	Chr12:98260715-98265002 (+)
BALB/cJ	ENSMUSG00180038196	lncRNA gene	Chr12:99584109-99588401 (+)
C3H/HeJ	ENSMUSG00175035151	lncRNA gene	Chr12:102200544-102204831 (+)
C57BL/6NJ	ENSMUSG00215041563	lncRNA gene	Chr12:98857096-98861383 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019512	lncRNA gene	Chr12:98308778-98313032 (+)
CBA/J	ENSMUSG00210015181	lncRNA gene	Chr12:99262549-99266836 (+)
DBA/2J	ENSMUSG00185029534	lncRNA gene	Chr12:101028197-101032484 (+)
FVB/NJ	ENSMUSG00205021070	lncRNA gene	Chr12:98269578-98273870 (+)
JF1/MsJ	ENSUMUG00000029634	lncRNA gene	Chr12:105796578-105800895 (+)
LP/J	ENSMUSG00230032870	lncRNA gene	Chr12:108086415-108090702 (+)
NOD/ShiLtJ	ENSMUSG00190026932	lncRNA gene	Chr12:86948487-86952774 (-)
NZO/HlLtJ	ENSMUSG00225038891	lncRNA gene	Chr12:109839119-109843411 (+)
PWK/PhJ	ENSLUMG00010013869	lncRNA gene	Chr12:99266869-99271183 (+)
SPRET/EiJ	ENSMSPG00010025393	lncRNA gene	Chr12:101563507-101567830 (+)
WSB/EiJ	ENSIUOG00005009833	lncRNA gene	Chr12:98271395-98275687 (+)

Homology

• Gene Tree
  Gm46378
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm46378
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000113427 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113427	Ensembl Gene Model | MGI Sequence Detail	7539	C57BL/6J
transcript	ENSMUST00000222979	Ensembl | MGI Sequence Detail	4288	Not Applicable

Other
Accession IDs

MGI:5623453

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;