Gm46349 Gene Detail

Summary

• Symbol
  Gm46349
• Name
  predicted gene, 46349

• Feature Type
  lncRNA gene
• IDs
  MGI:5825986
  NCBI Gene: 108167999
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:44002680-44003462 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  71

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825986	lncRNA gene	Chr12:44002462-44007880 (-)
129S1/SvImJ	ENSMUSG00200005914	lncRNA gene	Chr4:36238001-36243393 (+)
129S1/SvImJ	ENSMUSG00200012325	lncRNA gene	Chr12:35913379-35918797 (-)
A/J	ENSMUSG00195009103	lncRNA gene	Chr4:50414672-50420089 (-)
A/J	ENSMUSG00195018750	lncRNA gene	Chr12:38544417-38549837 (-)
AKR/J	ENSMUSG00220004245	lncRNA gene	Chr1:49485282-49490706 (+)
AKR/J	ENSMUSG00220005355	lncRNA gene	Chr12:36558072-36563492 (-)
BALB/cJ	ENSMUSG00180003495	lncRNA gene	Chr1:49660884-49666308 (+)
BALB/cJ	ENSMUSG00180003749	lncRNA gene	Chr12:37531525-37536945 (-)
C3H/HeJ	ENSMUSG00175021850	lncRNA gene	Chr4:50160412-50165829 (-)
C3H/HeJ	ENSMUSG00175017385	lncRNA gene	Chr12:40599130-40604550 (-)
C57BL/6NJ	ENSMUSG00215013689	lncRNA gene	Chr12:36942770-36948188 (-)
C57BL/6NJ	ENSMUSG00215035379	lncRNA gene	Chr4:36208781-36214575 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038081	lncRNA gene	Chr5:136001302-136006723 (+)
CAST/EiJ	ENSTCUG00005020411	lncRNA gene	Chr8:688348-693769 (+)
CBA/J	ENSMUSG00210016102	lncRNA gene	Chr12:37073756-37079176 (-)
CBA/J	ENSMUSG00210021571	lncRNA gene	Chr6:4581938-4587356 (+)
DBA/2J	ENSMUSG00185034874	lncRNA gene	Chr4:50242446-50247863 (-)
DBA/2J	ENSMUSG00185020591	lncRNA gene	Chr12:39071024-39076442 (-)
FVB/NJ	ENSMUSG00205050672	lncRNA gene	Chr15:79866292-79871710 (+)
FVB/NJ	ENSMUSG00205051220	lncRNA gene	Chr7:11701340-11706758 (-)
FVB/NJ	ENSMUSG00205028800	lncRNA gene	Chr6:55680654-55686073 (-)
FVB/NJ	ENSMUSG00205017167	lncRNA gene	Chr6:4793767-4799185 (+)
FVB/NJ	ENSMUSG00205001138	lncRNA gene	Chr5:76271108-76276525 (-)
FVB/NJ	ENSMUSG00205049590	lncRNA gene	Chr3:89158638-89164056 (-)
FVB/NJ	ENSMUSG00205012505	lncRNA gene	Chr16:41216423-41221841 (+)
FVB/NJ	ENSMUSG00205031573	lncRNA gene	Chr4:35946299-35952093 (+)
FVB/NJ	ENSMUSG00205024175	lncRNA gene	Chr4:47458999-47464418 (+)
FVB/NJ	ENSMUSG00205009394	lncRNA gene	Chr17:548658-554078 (+)
FVB/NJ	ENSMUSG00205009966	lncRNA gene	Chr10:23862215-23867630 (-)
FVB/NJ	ENSMUSG00205037858	lncRNA gene	Chr1:80776114-80781532 (-)
FVB/NJ	ENSMUSG00205038645	lncRNA gene	Chr11:6908966-6914384 (+)
JF1/MsJ	ENSUMUG00000012304	lncRNA gene	Chr11:24786435-24791855 (-)
JF1/MsJ	ENSUMUG00000049243	lncRNA gene	Chr7:18531865-18533405 (+)
JF1/MsJ	ENSUMUG00000036975	lncRNA gene	Chr6:67033012-67038430 (+)
JF1/MsJ	ENSUMUG00000003734	lncRNA gene	Chr1:4631891-4637309 (+)
JF1/MsJ	ENSUMUG00000020028	lncRNA gene	Chr10:115446590-115452009 (-)
JF1/MsJ	ENSUMUG00000015662	lncRNA gene	Chr13:21229288-21234706 (-)
JF1/MsJ	ENSUMUG00000015273	lncRNA gene	Chr16:67002794-67008212 (+)
JF1/MsJ	ENSUMUG00000035043	lncRNA gene	Chr19:11477768-11483181 (-)
JF1/MsJ	ENSUMUG00000002152	lncRNA gene	Chr4:11543415-11548836 (+)
JF1/MsJ	ENSUMUG00000012005	lncRNA gene	Chr6:9801572-9806964 (-)
LP/J	ENSMUSG00230010386	lncRNA gene	Chr12:46054472-46059890 (-)
LP/J	ENSMUSG00230001319	lncRNA gene	Chr4:39731448-39736840 (+)
LP/J	ENSMUSG00230018313	lncRNA gene	Chr6:5780613-5786031 (+)
NOD/ShiLtJ	ENSMUSG00190035767	lncRNA gene	Chr2:135370235-135375653 (+)
NOD/ShiLtJ	ENSMUSG00190003744	lncRNA gene	Chr12:36073784-36079202 (-)
NZO/HlLtJ	ENSMUSG00225010259	lncRNA gene	Chr1:53752275-53757699 (+)
NZO/HlLtJ	ENSMUSG00225031407	lncRNA gene	Chr12:48273088-48278506 (-)
PWK/PhJ	ENSLUMG00010015036	lncRNA gene	Chr1:120793040-120798455 (-)
PWK/PhJ	ENSLUMG00010004587	lncRNA gene	Chr5:57308437-57313480 (-)
PWK/PhJ	ENSLUMG00010008546	lncRNA gene	Chr3:399814-405233 (-)
PWK/PhJ	ENSLUMG00010046076	lncRNA gene	Chr1:90241500-90246920 (+)
PWK/PhJ	ENSLUMG00010027230	lncRNA gene	ChrX:93789449-93794867 (-)
PWK/PhJ	ENSLUMG00010002639	lncRNA gene	Chr8:122773654-122779076 (+)
PWK/PhJ	ENSLUMG00010010401	lncRNA gene	Chr4:61916584-61922002 (-)
PWK/PhJ	ENSLUMG00010020212	lncRNA gene	Chr17:10907679-10913097 (+)
PWK/PhJ	ENSLUMG00010040011	lncRNA gene	Chr2:167034749-167040167 (-)
PWK/PhJ	ENSLUMG00010000689	lncRNA gene	Chr3:33601050-33606468 (-)
PWK/PhJ	ENSLUMG00010049161	lncRNA gene	Chr7:1456519-1461938 (-)
PWK/PhJ	ENSLUMG00010052230	lncRNA gene	Chr7:1386191-1387731 (+)
PWK/PhJ	ENSLUMG00010016093	lncRNA gene	Chr3:124029924-124035241 (-)
PWK/PhJ	ENSLUMG00010010065	lncRNA gene	Chr13:107996550-108001967 (+)
PWK/PhJ	ENSLUMG00010011746	lncRNA gene	Chr13:62425055-62430472 (+)
PWK/PhJ	ENSLUMG00010025031	lncRNA gene	Chr10:83038521-83043924 (+)
PWK/PhJ	ENSLUMG00010016387	lncRNA gene	Chr6:98355889-98361293 (+)
SPRET/EiJ	ENSMSPG00010027299	lncRNA gene	Chr9:16747458-16752868 (-)
SPRET/EiJ	ENSMSPG00010048391	lncRNA gene	Chr7:1129206-1134624 (-)
WSB/EiJ	ENSIUOG00005024843	lncRNA gene	Chr2:135173866-135179284 (+)
WSB/EiJ	ENSIUOG00005001432	lncRNA gene	Chr12:36873112-36878530 (-)
WSB/EiJ	ENSIUOG00005008135	lncRNA gene	Chr11:6267597-6273019 (-)

Homology

• Gene Tree
  Gm46349
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  75
• RefSeq
  1

• Ensembl
  ENSMUSG00000111960 (Evidence)
• NCBI Gene
  108167999

Representative Sequences			Length	Strain/Species
genomic	108167999	NCBI Gene Model | MGI Sequence Detail	783	C57BL/6J
transcript	XR_004937589	RefSeq | MGI Sequence Detail	212	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;