Gm46348 Gene Detail

Summary

• Symbol
  Gm46348
• Name
  predicted gene, 46348

• Feature Type
  lncRNA gene
• IDs
  MGI:5825985
  NCBI Gene: 108167998
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:41998629-42038818 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825985	lncRNA gene	Chr12:41965491-42097684 (-)
129S1/SvImJ	ENSMUSG00200012193	lncRNA gene	Chr12:33850190-33948206 (-)
A/J	ENSMUSG00195019565	lncRNA gene	Chr12:36530348-36628387 (-)
AKR/J	ENSMUSG00220005425	lncRNA gene	Chr12:34529733-34627789 (-)
BALB/cJ	ENSMUSG00180003731	lncRNA gene	Chr12:35517524-35615579 (-)
C3H/HeJ	ENSMUSG00175017825	lncRNA gene	Chr12:38570667-38668709 (-)
C57BL/6NJ	ENSMUSG00215014039	lncRNA gene	Chr12:34905388-35003433 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003736	lncRNA gene	Chr12:35260113-35359507 (-)
CBA/J	ENSMUSG00210016257	lncRNA gene	Chr12:35049732-35147792 (-)
DBA/2J	ENSMUSG00185020569	lncRNA gene	Chr12:37057129-37155384 (-)
FVB/NJ	ENSMUSG00205001446	lncRNA gene	Chr12:34912596-35022545 (-)
JF1/MsJ	ENSUMUG00000003937	lncRNA gene	Chr12:41277496-41369005 (-)
LP/J	ENSMUSG00230010498	lncRNA gene	Chr12:44015230-44113247 (-)
NOD/ShiLtJ	ENSMUSG00190003682	lncRNA gene	Chr12:34060071-34158319 (-)
NZO/HlLtJ	ENSMUSG00225031484	lncRNA gene	Chr12:46234006-46332033 (-)
PWK/PhJ	ENSLUMG00010012631	lncRNA gene	Chr12:35400527-35491993 (-)
SPRET/EiJ	ENSMSPG00010001980	lncRNA gene	Chr12:36327922-36447801 (-)
WSB/EiJ	ENSIUOG00005001475	lncRNA gene	Chr12:34862780-34960824 (-)

Homology

• Gene Tree
  Gm46348
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000113370 (Evidence)
• NCBI Gene
  108167998

Representative Sequences			Length	Strain/Species
genomic	108167998	NCBI Gene Model | MGI Sequence Detail	40190	C57BL/6J
transcript	XR_001780604	RefSeq | MGI Sequence Detail	427	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;