Gm46311 Pseudogene Detail

Summary

• Symbol
  Gm46311
• Name
  predicted gene, 46311

• Feature Type
  pseudogene
• IDs
  MGI:5825948
  NCBI Gene: 108167953
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:7016758-7016960 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825948	pseudogene	Chr12:7016752-7017693 (-)
129S1/SvImJ	ENSMUSG00200024452	pseudogene	Chr12:3983908-3984110 (-)
A/J	ENSMUSG00195016701	pseudogene	Chr12:4025142-4025344 (-)
AKR/J	ENSMUSG00220032005	pseudogene	Chr12:4047058-4047260 (-)
BALB/cJ	ENSMUSG00180015186	pseudogene	Chr12:4021565-4021767 (-)
C3H/HeJ	ENSMUSG00175009892	pseudogene	Chr12:3999087-3999289 (-)
C57BL/6NJ	ENSMUSG00215027334	pseudogene	Chr12:3944359-3944561 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023885	pseudogene	Chr12:3806724-3806926 (-)
CBA/J	ENSMUSG00210013647	pseudogene	Chr12:4030298-4030500 (-)
DBA/2J	ENSMUSG00185021381	pseudogene	Chr12:3990549-3990751 (-)
FVB/NJ	ENSMUSG00205003315	pseudogene	Chr12:3773770-3773972 (-)
JF1/MsJ	ENSUMUG00000040659	pseudogene	Chr12:3975505-3975707 (-)
LP/J	ENSMUSG00230012323	pseudogene	Chr12:5820533-5820735 (-)
NOD/ShiLtJ	ENSMUSG00190008531	pseudogene	Chr12:5234837-5235039 (-)
NZO/HlLtJ	ENSMUSG00225019435	pseudogene	Chr12:7880677-7880879 (-)
PWK/PhJ	ENSLUMG00010017316	pseudogene	Chr12:3794831-3795033 (-)
SPRET/EiJ	ENSMSPG00010005395	pseudogene	Chr12:4285556-4285758 (+)
WSB/EiJ	ENSIUOG00005002412	pseudogene	Chr12:4017159-4017361 (-)

Homology

• Gene Tree
  Gm46311
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111975 (Evidence)
• NCBI Gene
  108167953

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111975	Ensembl Gene Model | MGI Sequence Detail	203	C57BL/6J
transcript	ENSMUST00000217971	Ensembl | MGI Sequence Detail	203	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;