Gm46280 Gene Detail

Summary

• Symbol
  Gm46280
• Name
  predicted gene, 46280

• Feature Type
  lncRNA gene
• IDs
  MGI:5825917
  NCBI Gene: 108167898
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:50216707-50217983 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825917	lncRNA gene	Chr11:50216664-50263594 (+)
129S1/SvImJ	ENSMUSG00200040450	lncRNA gene	Chr11:47195146-47196967 (+)
A/J	ENSMUSG00195036758	lncRNA gene	Chr11:47145961-47147782 (+)
AKR/J	ENSMUSG00220039607	lncRNA gene	Chr11:47336470-47338292 (+)
BALB/cJ	ENSMUSG00180038738	lncRNA gene	Chr11:47207472-47209293 (+)
C3H/HeJ	ENSMUSG00175038254	lncRNA gene	Chr11:47177554-47179375 (+)
C57BL/6NJ	ENSMUSG00215037675	lncRNA gene	Chr11:47104403-47106224 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044133	lncRNA gene	Chr11:46735405-46737230 (+)
CBA/J	ENSMUSG00210030278	lncRNA gene	Chr11:47033516-47035337 (+)
DBA/2J	ENSMUSG00185028575	lncRNA gene	Chr11:47287727-47289548 (+)
FVB/NJ	ENSMUSG00205039998	lncRNA gene	Chr11:47075340-47077161 (+)
JF1/MsJ	ENSUMUG00000042521	lncRNA gene	Chr11:47549375-47551197 (+)
LP/J	ENSMUSG00230033593	lncRNA gene	Chr11:48426864-48428685 (+)
NOD/ShiLtJ	ENSMUSG00190041677	lncRNA gene	Chr11:47292127-47293948 (+)
NZO/HlLtJ	ENSMUSG00225036232	lncRNA gene	Chr11:50414898-50416720 (+)
PWK/PhJ	ENSLUMG00010034866	lncRNA gene	Chr11:47070073-47071896 (+)
SPRET/EiJ	ENSMSPG00010020277	lncRNA gene	Chr11:47721590-47723418 (+)
WSB/EiJ	ENSIUOG00005040508	lncRNA gene	Chr11:47094574-47096397 (+)

Homology

• Gene Tree
  Gm46280
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  37
• Gene trapped
  37
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120045 (Evidence)
• NCBI Gene
  108167898

Representative Sequences			Length	Strain/Species
genomic	108167898	NCBI Gene Model | MGI Sequence Detail	1277	C57BL/6J
transcript	NR_175336	RefSeq | MGI Sequence Detail	457	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm46280:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101244	Chr11:50216701-50216724 (+)	6 bp
Tssr101245	Chr11:50216727-50216776 (+)	45 bp