Gm46233 Pseudogene Detail

Summary

• Symbol
  Gm46233
• Name
  predicted gene, 46233

• Feature Type
  pseudogene
• IDs
  MGI:5825870
  NCBI Gene: 108167820
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:71318911-71319359 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825870	pseudogene	Chr10:71318886-71319727 (+)
129S1/SvImJ	ENSMUSG00200017675	pseudogene	Chr10:68013848-68014296 (+)
A/J	ENSMUSG00195006318	pseudogene	Chr10:68311207-68311655 (+)
AKR/J	ENSMUSG00220029887	pseudogene	Chr10:67979939-67980387 (+)
BALB/cJ	ENSMUSG00180007898	pseudogene	Chr10:68345642-68346090 (+)
C3H/HeJ	ENSMUSG00175012996	pseudogene	Chr10:68185774-68186222 (+)
C57BL/6NJ	ENSMUSG00215004156	pseudogene	Chr10:67955036-67955484 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027505	pseudogene	Chr10:67890166-67890614 (+)
CBA/J	ENSMUSG00210009847	pseudogene	Chr10:68060411-68060859 (+)
DBA/2J	ENSMUSG00185021066	pseudogene	Chr10:68415997-68416445 (+)
FVB/NJ	ENSMUSG00205007905	pseudogene	Chr10:68155478-68155926 (+)
JF1/MsJ	ENSUMUG00000023453	pseudogene	Chr10:69583182-69583630 (+)
LP/J	ENSMUSG00230019772	pseudogene	Chr10:70185975-70186423 (+)
NOD/ShiLtJ	ENSMUSG00190008092	pseudogene	Chr10:68410148-68410596 (+)
NZO/HlLtJ	ENSMUSG00225048687	pseudogene	Chr10:74482182-74482630 (+)
PWK/PhJ	ENSLUMG00010008014	pseudogene	Chr10:67995421-67995869 (+)
SPRET/EiJ	ENSMSPG00010024343	pseudogene	Chr10:69682155-69682603 (+)
WSB/EiJ	ENSIUOG00005034199	pseudogene	Chr10:67917569-67918017 (+)

Homology

• Gene Tree
  Gm46233
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000112608 (Evidence)
• NCBI Gene
  108167820

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112608	Ensembl Gene Model | MGI Sequence Detail	449	C57BL/6J
transcript	ENSMUST00000217831	Ensembl | MGI Sequence Detail	449	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46233:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94033	Chr10:71318814-71318839 (+)	-84 bp