Gm46218 Gene Detail

Summary

• Symbol
  Gm46218
• Name
  predicted gene, 46218

• Feature Type
  lncRNA gene
• IDs
  MGI:5825855
  NCBI Gene: 108167802
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:29163243-29189413 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  816 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825855	lncRNA gene	Chr10:29133757-29189821 (-)
129S1/SvImJ	ENSMUSG00200010493	lncRNA gene	Chr10:26015733-26032589 (-)
A/J	ENSMUSG00195015508	lncRNA gene	Chr10:26297619-26314476 (-)
AKR/J	ENSMUSG00220011629	lncRNA gene	Chr10:25992301-26009157 (-)
BALB/cJ	ENSMUSG00180018529	lncRNA gene	Chr10:26422708-26439562 (-)
C3H/HeJ	ENSMUSG00175025622	lncRNA gene	Chr10:26158676-26175528 (-)
C57BL/6NJ	ENSMUSG00215014122	lncRNA gene	Chr10:25970906-25987760 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014716	lncRNA gene	Chr10:25798791-25815403 (-)
CBA/J	ENSMUSG00210023617	lncRNA gene	Chr10:26105352-26122206 (-)
DBA/2J	ENSMUSG00185007822	lncRNA gene	Chr10:26258037-26274891 (-)
FVB/NJ	ENSMUSG00205010507	lncRNA gene	Chr10:26243389-26265820 (-)
JF1/MsJ	ENSUMUG00000019139	lncRNA gene	Chr10:26056228-26075912 (-)
LP/J	ENSMUSG00230012722	lncRNA gene	Chr10:28026148-28043002 (-)
NOD/ShiLtJ	ENSMUSG00190015412	lncRNA gene	Chr10:26363290-26380144 (-)
NZO/HlLtJ	ENSMUSG00225034550	lncRNA gene	Chr10:32285084-32301938 (-)
PWK/PhJ	ENSLUMG00010010893	lncRNA gene	Chr10:25918273-25935273 (-)
SPRET/EiJ	ENSMSPG00010015217	lncRNA gene	Chr10:26845812-26862766 (-)
WSB/EiJ	ENSIUOG00005032436	lncRNA gene	Chr10:25727317-25749736 (-)

Homology

• Gene Tree
  Gm46218
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000110830 (Evidence)
• NCBI Gene
  108167802

Representative Sequences			Length	Strain/Species
genomic	108167802	NCBI Gene Model | MGI Sequence Detail	26171	C57BL/6J
transcript	XR_001779751	RefSeq | MGI Sequence Detail	11080	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46218:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97160	Chr10:29189371-29189405 (-)	25 bp