Gm46197 Pseudogene Detail

Summary

• Symbol
  Gm46197
• Name
  predicted gene, 46197

• Feature Type
  pseudogene
• IDs
  MGI:5825834
  NCBI Gene: 108167779
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:29490157-29490572 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825834	pseudogene	Chr10:29490154-29490572 (-)
129S1/SvImJ	ENSMUSG00200010011	pseudogene	Chr10:26333037-26333452 (-)
A/J	ENSMUSG00195014630	pseudogene	Chr10:26614984-26615399 (-)
AKR/J	ENSMUSG00220011577	pseudogene	Chr10:26309666-26310081 (-)
BALB/cJ	ENSMUSG00180017766	pseudogene	Chr10:26740095-26740510 (-)
C3H/HeJ	ENSMUSG00175025240	pseudogene	Chr10:26476009-26476424 (-)
C57BL/6NJ	ENSMUSG00215013221	pseudogene	Chr10:26288262-26288677 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014254	pseudogene	Chr10:26124889-26125304 (-)
CBA/J	ENSMUSG00210023473	pseudogene	Chr10:26422728-26423143 (-)
DBA/2J	ENSMUSG00185007413	pseudogene	Chr10:26575379-26575794 (-)
FVB/NJ	ENSMUSG00205010431	pseudogene	Chr10:26561242-26561657 (-)
JF1/MsJ	ENSUMUG00000017430	pseudogene	Chr10:26383505-26383920 (-)
LP/J	ENSMUSG00230012612	pseudogene	Chr10:28343428-28343843 (-)
NOD/ShiLtJ	ENSMUSG00190015436	pseudogene	Chr10:26680642-26681057 (-)
NZO/HlLtJ	ENSMUSG00225034524	pseudogene	Chr10:32602422-32602837 (-)
PWK/PhJ	ENSLUMG00010010244	pseudogene	Chr10:26242231-26242646 (-)
SPRET/EiJ	ENSMSPG00010015134	pseudogene	Chr10:27195947-27196362 (-)
WSB/EiJ	ENSIUOG00005032274	pseudogene	Chr10:26055206-26055621 (-)

Homology

• Gene Tree
  Gm46197
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111046 (Evidence)
• NCBI Gene
  108167779

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111046	Ensembl Gene Model | MGI Sequence Detail	416	C57BL/6J
transcript	ENSMUST00000217530	Ensembl | MGI Sequence Detail	416	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;