Gm46189 Gene Detail

Summary

• Symbol
  Gm46189
• Name
  predicted gene, 46189

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5825826
  NCBI Gene: 118567810
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:51336700-51339475 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825826	lncRNA gene	Chr10:51332076-51339475 (+)
129S1/SvImJ	ENSMUSG00200007608	lncRNA gene	Chr10:48221530-48226954 (+)
A/J	ENSMUSG00195003003	lncRNA gene	Chr10:48496191-48501615 (+)
AKR/J	ENSMUSG00220006786	lncRNA gene	Chr10:48176269-48181693 (+)
BALB/cJ	ENSMUSG00180012333	lncRNA gene	Chr10:48625881-48631306 (+)
C3H/HeJ	ENSMUSG00175010174	lncRNA gene	Chr10:48367084-48372508 (+)
C57BL/6NJ	ENSMUSG00215002371	lncRNA gene	Chr10:48130969-48136393 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008748	lncRNA gene	Chr10:48373891-48379290 (+)
CBA/J	ENSMUSG00210008525	lncRNA gene	Chr10:48270286-48275710 (+)
DBA/2J	ENSMUSG00185003422	lncRNA gene	Chr10:48426423-48431847 (+)
FVB/NJ	ENSMUSG00205005016	lncRNA gene	Chr10:48345850-48351271 (+)
JF1/MsJ	ENSUMUG00000030977	lncRNA gene	Chr10:48131524-48136971 (+)
LP/J	ENSMUSG00230006759	lncRNA gene	Chr10:50228010-50233435 (+)
NOD/ShiLtJ	ENSMUSG00190005827	lncRNA gene	Chr10:48590746-48596170 (+)
NZO/HlLtJ	ENSMUSG00225023061	lncRNA gene	Chr10:54508914-54514337 (+)
PWK/PhJ	ENSLUMG00010004656	lncRNA gene	Chr10:48256727-48262164 (+)
SPRET/EiJ	ENSMSPG00010014015	lncRNA gene	Chr10:49550555-49555989 (+)
WSB/EiJ	ENSIUOG00005015058	lncRNA gene	Chr10:48213814-48219216 (+)

Homology

• Gene Tree
  Gm46189
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000112212 (Evidence)
• NCBI Gene
  118567810

Representative Sequences			Length	Strain/Species
genomic	118567810	NCBI Gene Model | MGI Sequence Detail	2776	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46189:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93230	Chr10:51335354-51335361 (+)	-1,342 bp
Tssr93231	Chr10:51336026-51336030 (+)	-672 bp