Gm46142 Pseudogene Detail

Summary

• Symbol
  Gm46142
• Name
  predicted gene, 46142

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5825779
  NCBI Gene: 108167705
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:20466625-20467083 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825779	pseudogene	Chr9:20466625-20467105 (+)
129S1/SvImJ	ENSMUSG00200050546	pseudogene	Chr9:17420887-17421367 (+)
A/J	ENSMUSG00195041061	pseudogene	Chr9:17257053-17257533 (+)
AKR/J	ENSMUSG00220035518	pseudogene	Chr9:17259591-17260071 (+)
BALB/cJ	ENSMUSG00180044834	pseudogene	Chr9:17384995-17385475 (+)
C3H/HeJ	ENSMUSG00175044276	pseudogene	Chr9:17353781-17354261 (+)
C57BL/6NJ	ENSMUSG00215039217	pseudogene	Chr9:17351254-17351734 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034359	pseudogene	Chr9:17394551-17395030 (+)
CBA/J	ENSMUSG00210044950	pseudogene	Chr9:17335030-17335510 (+)
DBA/2J	ENSMUSG00185027839	pseudogene	Chr9:17450259-17450739 (+)
FVB/NJ	ENSMUSG00205045478	pseudogene	Chr9:17648089-17648569 (+)
JF1/MsJ	ENSUMUG00000021162	pseudogene	Chr5:105228054-105228533 (-)
JF1/MsJ	ENSUMUG00000049523	pseudogene	Chr9:17562369-17562848 (+)
LP/J	ENSMUSG00230043916	pseudogene	Chr9:17831407-17831887 (+)
NOD/ShiLtJ	ENSMUSG00190041034	pseudogene	Chr9:17375485-17375965 (+)
NZO/HlLtJ	ENSMUSG00225051775	pseudogene	Chr9:17792544-17793024 (+)
PWK/PhJ	ENSLUMG00010046932	pseudogene	Chr9:17453186-17453665 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047184	pseudogene	Chr9:16917069-16917549 (+)

Homology

• Gene Tree
  Gm46142
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000111661 (Evidence)
• NCBI Gene
  108167705

Representative Sequences			Length	Strain/Species
genomic	108167705	NCBI Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	XM_036155428	RefSeq | MGI Sequence Detail	459	C57BL/6J
polypeptide	XP_036011321	RefSeq | MGI Sequence Detail	143	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;