Gm46133 Gene Detail

Summary

• Symbol
  Gm46133
• Name
  predicted gene, 46133

• Feature Type
  lncRNA gene
• IDs
  MGI:5825770
  NCBI Gene: 108167686
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:112970309-112982851 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  559 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825770	lncRNA gene	Chr9:112947772-112983192 (+)
129S1/SvImJ	ENSMUSG00200045028	lncRNA gene	Chr9:110034872-110067232 (+)
A/J	ENSMUSG00195045855	lncRNA gene	Chr9:109357690-109389226 (+)
AKR/J	ENSMUSG00220030219	lncRNA gene	Chr9:109687522-109719065 (+)
BALB/cJ	ENSMUSG00180034764	lncRNA gene	Chr9:109785264-109816788 (+)
C3H/HeJ	ENSMUSG00175048268	lncRNA gene	Chr9:110006266-110037803 (+)
C57BL/6NJ	ENSMUSG00215042779	lncRNA gene	Chr9:109895510-109927055 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035724	lncRNA gene	Chr9:109688823-109720551 (+)
CBA/J	ENSMUSG00210044790	lncRNA gene	Chr9:109719174-109750703 (+)
DBA/2J	ENSMUSG00185043982	lncRNA gene	Chr9:110055106-110086637 (+)
FVB/NJ	ENSMUSG00205050631	lncRNA gene	Chr9:109993798-110025335 (+)
JF1/MsJ	ENSUMUG00000055616	lncRNA gene	Chr9:109828666-109862122 (+)
LP/J	ENSMUSG00230050569	lncRNA gene	Chr9:110166768-110199121 (+)
NOD/ShiLtJ	ENSMUSG00190050251	lncRNA gene	Chr9:109649056-109680585 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010046139	lncRNA gene	Chr9:109834535-109867012 (+)
SPRET/EiJ	ENSMSPG00010023674	lncRNA gene	Chr9:111671751-111706275 (+)
WSB/EiJ	ENSIUOG00005048194	lncRNA gene	Chr9:109127885-109159464 (+)

Homology

• Gene Tree
  Gm46133
  

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000120314 (Evidence)
• NCBI Gene
  108167686

Representative Sequences			Length	Strain/Species
genomic	108167686	NCBI Gene Model | MGI Sequence Detail	12543	C57BL/6J
transcript	XR_001779309	RefSeq | MGI Sequence Detail	506	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;