Gm46129 Gene Detail

Summary

• Symbol
  Gm46129
• Name
  predicted gene, 46129

• Feature Type
  lncRNA gene
• IDs
  MGI:5825766
  NCBI Gene: 108167680
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:103598284-103603056 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  324 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825766	lncRNA gene	Chr9:103577919-103603174 (+)
129S1/SvImJ	ENSMUSG00200016937	lncRNA gene	Chr9:100752455-100757040 (+)
A/J	ENSMUSG00195019509	lncRNA gene	Chr9:99977460-99982073 (+)
AKR/J	ENSMUSG00220042083	lncRNA gene	Chr9:100367114-100371723 (+)
BALB/cJ	ENSMUSG00180026875	lncRNA gene	Chr9:100294010-100298619 (+)
C3H/HeJ	ENSMUSG00175013882	lncRNA gene	Chr9:100636719-100641332 (+)
C57BL/6NJ	ENSMUSG00215026727	lncRNA gene	Chr9:100635859-100640446 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013475	lncRNA gene	Chr9:100434879-100439577 (+)
CBA/J	ENSMUSG00210015795	lncRNA gene	Chr9:100484971-100489556 (+)
DBA/2J	ENSMUSG00185012295	lncRNA gene	Chr9:100645261-100649870 (+)
FVB/NJ	ENSMUSG00205027158	lncRNA gene	Chr9:100644555-100649168 (+)
JF1/MsJ	ENSUMUG00000042858	lncRNA gene	Chr9:100479929-100484631 (+)
LP/J	ENSMUSG00230020755	lncRNA gene	Chr9:100787778-100792361 (+)
NOD/ShiLtJ	ENSMUSG00190042966	lncRNA gene	Chr9:100279727-100284336 (+)
NZO/HlLtJ	ENSMUSG00225021356	lncRNA gene	Chr9:101014818-101019431 (+)
PWK/PhJ	ENSLUMG00010028697	lncRNA gene	Chr9:100423775-100428378 (+)
SPRET/EiJ	ENSMSPG00010047190	lncRNA gene	Chr9:102275070-102279634 (+)
WSB/EiJ	ENSIUOG00005025311	lncRNA gene	Chr9:99715282-99719856 (+)

Homology

• Gene Tree
  Gm46129
  

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000120691 (Evidence)
• NCBI Gene
  108167680

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120691	Ensembl Gene Model | MGI Sequence Detail	4773	C57BL/6J
transcript	ENSMUST00000247277	Ensembl | MGI Sequence Detail	453	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46129:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86802	Chr9:103598462-103598505 (+)	200 bp