Gm46124 Gene Detail

Summary

• Symbol
  Gm46124
• Name
  predicted gene, 46124

• Feature Type
  lncRNA gene
• IDs
  MGI:5825761
  NCBI Gene: 108167669
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:83889527-83906841 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  674 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825761	lncRNA gene	Chr9:83843538-83906870 (-)
129S1/SvImJ	ENSMUSG00200019794	lncRNA gene	Chr9:80979420-80995084 (-)
A/J	ENSMUSG00195010781	lncRNA gene	Chr9:80797188-80812854 (-)
AKR/J	ENSMUSG00220015544	lncRNA gene	Chr9:80883308-80898541 (-)
BALB/cJ	ENSMUSG00180019767	lncRNA gene	Chr9:80902087-80917751 (-)
C3H/HeJ	ENSMUSG00175012080	lncRNA gene	Chr9:80962174-80977842 (-)
C57BL/6NJ	ENSMUSG00215020469	lncRNA gene	Chr9:80896473-80912149 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009876	lncRNA gene	Chr9:80487532-80503032 (-)
CBA/J	ENSMUSG00210013492	lncRNA gene	Chr9:80989886-81005119 (-)
DBA/2J	ENSMUSG00185008553	lncRNA gene	Chr9:80999445-81014677 (-)
FVB/NJ	ENSMUSG00205033899	lncRNA gene	Chr9:81201000-81216661 (-)
JF1/MsJ	ENSUMUG00000043585	lncRNA gene	Chr9:80891130-80906367 (-)
LP/J	ENSMUSG00230024877	lncRNA gene	Chr9:81117707-81133369 (-)
NOD/ShiLtJ	ENSMUSG00190035018	lncRNA gene	Chr9:81091955-81107615 (-)
NZO/HlLtJ	ENSMUSG00225025892	lncRNA gene	Chr9:81318729-81334389 (-)
PWK/PhJ	ENSLUMG00010016777	lncRNA gene	Chr9:80827174-80842389 (-)
SPRET/EiJ	ENSMSPG00010002712	lncRNA gene	Chr9:82171783-82187420 (-)
WSB/EiJ	ENSIUOG00005026000	lncRNA gene	Chr9:80465209-80480672 (-)

Homology

• Gene Tree
  Gm46124
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000111757 (Evidence)
• NCBI Gene
  108167669

Representative Sequences			Length	Strain/Species
genomic	108167669	NCBI Gene Model | MGI Sequence Detail	17315	C57BL/6J
transcript	XR_001779250	RefSeq | MGI Sequence Detail	2496	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;