Gm46120 Gene Detail

Summary

• Symbol
  Gm46120
• Name
  predicted gene, 46120

• Feature Type
  lncRNA gene
• IDs
  MGI:5825757
  NCBI Gene: 108167664
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:70976432-70983807 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  321 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825757	lncRNA gene	Chr9:70951435-70983817 (+)
129S1/SvImJ	ENSMUSG00200043457	lncRNA gene	Chr9:68074519-68081951 (+)
A/J	ENSMUSG00195026627	lncRNA gene	Chr9:67855739-67863171 (+)
AKR/J	ENSMUSG00220042154	lncRNA gene	Chr9:67992367-67999759 (+)
BALB/cJ	ENSMUSG00180019510	lncRNA gene	Chr9:67970067-67977501 (+)
C3H/HeJ	ENSMUSG00175014034	lncRNA gene	Chr9:67983381-67990811 (+)
C57BL/6NJ	ENSMUSG00215037171	lncRNA gene	Chr9:67922855-67930245 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034019	lncRNA gene	Chr9:67797433-67804794 (+)
CBA/J	ENSMUSG00210014675	lncRNA gene	Chr9:68064068-68071504 (+)
DBA/2J	ENSMUSG00185034713	lncRNA gene	Chr9:68087797-68095230 (+)
FVB/NJ	ENSMUSG00205034807	lncRNA gene	Chr9:68362125-68369554 (+)
JF1/MsJ	ENSUMUG00000040879	lncRNA gene	Chr9:68142256-68149682 (+)
LP/J	ENSMUSG00230028112	lncRNA gene	Chr9:68269623-68277053 (+)
NOD/ShiLtJ	ENSMUSG00190024196	lncRNA gene	Chr9:68186494-68193924 (+)
NZO/HlLtJ	ENSMUSG00225047131	lncRNA gene	Chr9:68385944-68393364 (+)
PWK/PhJ	ENSLUMG00010028036	lncRNA gene	Chr9:68061569-68068952 (+)
SPRET/EiJ	ENSMSPG00010022692	lncRNA gene	Chr9:69143068-69156143 (+)
WSB/EiJ	ENSIUOG00005027828	lncRNA gene	Chr9:67544935-67552331 (+)

Homology

• Gene Tree
  Gm46120
  

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000119965 (Evidence)
• NCBI Gene
  108167664

Representative Sequences			Length	Strain/Species
genomic	108167664	NCBI Gene Model | MGI Sequence Detail	7376	C57BL/6J
transcript	NR_168672	RefSeq | MGI Sequence Detail	710	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46120:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85954	Chr9:70976430-70976434 (+)	0 bp