Gm46069 Gene Detail

Summary

• Symbol
  Gm46069
• Name
  predicted gene, 46069

• Feature Type
  lncRNA gene
• IDs
  MGI:5825706
  NCBI Gene: 108167581
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:35155833-35157112 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825706	lncRNA gene	Chr8:35155827-35157123 (-)
129S1/SvImJ	ENSMUSG00200007958	lncRNA gene	Chr8:30229623-30230849 (-)
A/J	ENSMUSG00195006427	lncRNA gene	Chr8:30732433-30733662 (-)
AKR/J	ENSMUSG00220006223	lncRNA gene	Chr8:30495251-30496478 (-)
BALB/cJ	ENSMUSG00180003295	lncRNA gene	Chr8:30275781-30277010 (-)
C3H/HeJ	ENSMUSG00175015007	lncRNA gene	Chr8:30438488-30439715 (-)
C57BL/6NJ	ENSMUSG00215009350	lncRNA gene	Chr8:30224587-30225806 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005631	lncRNA gene	Chr8:30402522-30403745 (-)
CBA/J	ENSMUSG00210012771	lncRNA gene	Chr8:30261438-30262667 (-)
DBA/2J	ENSMUSG00185002151	lncRNA gene	Chr8:36187764-36188993 (-)
FVB/NJ	ENSMUSG00205004684	lncRNA gene	Chr8:29490514-29491732 (-)
JF1/MsJ	ENSUMUG00000008483	lncRNA gene	Chr8:37900264-37901483 (-)
LP/J	ENSMUSG00230015920	lncRNA gene	Chr8:39837021-39838248 (-)
NOD/ShiLtJ	ENSMUSG00190016289	lncRNA gene	Chr8:30307854-30309076 (-)
NZO/HlLtJ	ENSMUSG00225014906	lncRNA gene	Chr8:43437253-43438473 (-)
PWK/PhJ	ENSLUMG00010013289	lncRNA gene	Chr8:30128502-30129720 (-)
SPRET/EiJ	ENSMSPG00010004619	lncRNA gene	Chr8:30815049-30816700 (-)
WSB/EiJ	ENSIUOG00005005742	lncRNA gene	Chr8:31060297-31061523 (-)

Homology

• Gene Tree
  Gm46069
  

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000120666 (Evidence)
• NCBI Gene
  108167581

Representative Sequences			Length	Strain/Species
genomic	108167581	NCBI Gene Model | MGI Sequence Detail	1280	C57BL/6J
transcript	XR_001778750	RefSeq | MGI Sequence Detail	611	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm46069:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80912	Chr8:35157034-35157060 (-)	65 bp