Gm45941 Gene Detail

Summary

• Symbol
  Gm45941
• Name
  predicted gene, 45941

• Feature Type
  lncRNA gene
• IDs
  MGI:5825578
  NCBI Gene: 108167330
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:27996041-28035100 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1006 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5825578	lncRNA gene	Chr12:27989288-28045336 (+)
129S1/SvImJ	ENSMUSG00200023628	lncRNA gene	Chr12:19776944-19812982 (+)
A/J	ENSMUSG00195022344	lncRNA gene	Chr12:22492586-22528621 (+)
AKR/J	ENSMUSG00220033066	lncRNA gene	Chr12:20440970-20477025 (+)
BALB/cJ	ENSMUSG00180025789	lncRNA gene	Chr12:21435254-21471296 (+)
C3H/HeJ	ENSMUSG00175022725	lncRNA gene	Chr12:24515837-24551876 (+)
C57BL/6NJ	ENSMUSG00215023562	lncRNA gene	Chr12:20909868-20946064 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010430	lncRNA gene	Chr12:21311357-21347511 (+)
CBA/J	ENSMUSG00210008608	lncRNA gene	Chr12:21003685-21039727 (+)
DBA/2J	ENSMUSG00185015948	lncRNA gene	Chr12:23015988-23052030 (+)
FVB/NJ	ENSMUSG00205006449	lncRNA gene	Chr12:21057167-21093212 (+)
JF1/MsJ	ENSUMUG00000006454	lncRNA gene	Chr12:27218667-27254866 (+)
LP/J	ENSMUSG00230006965	lncRNA gene	Chr12:29980611-30016655 (+)
NOD/ShiLtJ	ENSMUSG00190013749	lncRNA gene	Chr12:19942491-19978524 (+)
NZO/HlLtJ	ENSMUSG00225031570	lncRNA gene	Chr12:32173718-32209758 (+)
PWK/PhJ	ENSLUMG00010011457	lncRNA gene	Chr12:21448677-21484856 (+)
SPRET/EiJ	ENSMSPG00010006227	lncRNA gene	Chr12:21844772-21885094 (+)
WSB/EiJ	ENSIUOG00005021012	lncRNA gene	Chr12:20634634-20670696 (+)

Homology

• Gene Tree
  Gm45941
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  3

• Ensembl
  ENSMUSG00000113616 (Evidence)
• NCBI Gene
  108167330

Representative Sequences			Length	Strain/Species
genomic	108167330	NCBI Gene Model | MGI Sequence Detail	39060	C57BL/6J
transcript	XR_381389	RefSeq | MGI Sequence Detail	3496	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;