Gm45901 Gene Detail

Summary

• Symbol
  Gm45901
• Name
  predicted gene 45901

• Feature Type
  lncRNA gene
• IDs
  MGI:5805016
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:90463375-90496462 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  819 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5805016	lncRNA gene	Chr6:90463375-90496462 (+)
129S1/SvImJ	ENSMUSG00200046063	lncRNA gene	Chr6:87407403-87442827 (+)
A/J	ENSMUSG00195040213	lncRNA gene	Chr6:87124082-87163376 (+)
AKR/J	ENSMUSG00220037340	lncRNA gene	Chr6:86042398-86080837 (+)
BALB/cJ	ENSMUSG00180018593	lncRNA gene	Chr6:87497496-87534960 (+)
C3H/HeJ	ENSMUSG00175026341	lncRNA gene	Chr6:89906673-89942530 (-)
C57BL/6NJ	ENSMUSG00215037751	lncRNA gene	Chr6:87501106-87538901 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006389	lincRNA gene	Chr6:86509884-86543015 (+)
CAST/EiJ	ENSTCUG00005018960	lncRNA gene	Chr6:87610311-87642445 (+)
CBA/J	ENSMUSG00210046359	lncRNA gene	Chr6:87277670-87315731 (+)
DBA/2J	ENSMUSG00185047118	lncRNA gene	Chr6:87825038-87860713 (+)
FVB/NJ	ENSMUSG00205041098	lncRNA gene	Chr6:86458115-86496118 (+)
JF1/MsJ	ENSUMUG00000046395	lncRNA gene	Chr6:86766376-86798257 (+)
LP/J	ENSMUSG00230050864	lncRNA gene	Chr6:88965161-89000627 (+)
NOD/ShiLtJ	ENSMUSG00190046746	lncRNA gene	Chr6:86896846-86931046 (+)
NZO/HlLtJ	ENSMUSG00225019866	lncRNA gene	Chr6:90973089-91011190 (+)
PWK/PhJ	ENSLUMG00010037733	lncRNA gene	Chr6:86190369-86223036 (+)
SPRET/EiJ	ENSMSPG00010044728	lncRNA gene	Chr6:88452909-88486066 (+)
WSB/EiJ	ENSIUOG00005034788	lncRNA gene	Chr6:87893602-87925302 (+)

Homology

• Gene Tree
  Gm45901
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108111 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108111	Ensembl Gene Model | MGI Sequence Detail	33088	C57BL/6J
transcript	ENSMUST00000203807	Ensembl | MGI Sequence Detail	661	Not Applicable

References

• Summaries
  All 6

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841

TSS for Gm45901:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57655	Chr6:90463359-90463370 (+)	-10 bp
Tssr57656	Chr6:90463392-90463412 (+)	27 bp