Gm45796 Pseudogene Detail

Summary

• Symbol
  Gm45796
• Name
  predicted gene 45796

• Feature Type
  pseudogene
• IDs
  MGI:5804911
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:22425367-22425840 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5804911	pseudogene	Chr8:22425367-22425840 (+)
129S1/SvImJ	ENSMUSG00200033258	pseudogene	Chr8:17469963-17470435 (+)
A/J	ENSMUSG00195044797	pseudogene	Chr8:18021389-18021861 (+)
AKR/J	ENSMUSG00220034070	pseudogene	Chr8:17641589-17642062 (+)
BALB/cJ	ENSMUSG00180027242	pseudogene	Chr8:17546044-17546516 (+)
C3H/HeJ	ENSMUSG00175039537	pseudogene	Chr8:17612403-17612875 (+)
C57BL/6NJ	ENSMUSG00215028433	pseudogene	Chr8:17481471-17481944 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019320	pseudogene	Chr8:17863010-17863480 (+)
CBA/J	ENSMUSG00210044573	pseudogene	Chr8:17545696-17546168 (+)
DBA/2J	ENSMUSG00185039003	pseudogene	Chr8:23348702-23349174 (+)
FVB/NJ	ENSMUSG00205033743	pseudogene	Chr8:17037904-17038376 (+)
JF1/MsJ	ENSUMUG00000026145	pseudogene	Chr8:25243276-25243736 (+)
LP/J	ENSMUSG00230011674	pseudogene	Chr8:27117880-27118353 (+)
NOD/ShiLtJ	ENSMUSG00190038234	pseudogene	Chr8:17579213-17579685 (+)
NZO/HlLtJ	ENSMUSG00225021630	pseudogene	Chr8:30721649-30722122 (+)
PWK/PhJ	ENSLUMG00010031043	pseudogene	Chr8:17602911-17603371 (+)
SPRET/EiJ	ENSMSPG00010014883	pseudogene	Chr8:17847250-17847721 (+)
WSB/EiJ	ENSIUOG00005022332	pseudogene	Chr8:18272767-18273240 (+)

Homology

• Gene Tree
  Gm45796
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm45796
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000110681 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110681	Ensembl Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	ENSMUST00000212483	Ensembl | MGI Sequence Detail	114	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662

TSS for Gm45796:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76560	Chr8:22425326-22425335 (+)	-36 bp