Gm45778 Pseudogene Detail

Summary

• Symbol
  Gm45778
• Name
  predicted gene 45778

• Feature Type
  pseudogene
• IDs
  MGI:5804893
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:84476133-84476285 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5804893	pseudogene	Chr8:84476133-84476285 (+)
129S1/SvImJ	ENSMUSG00200025613	pseudogene	Chr8:78847322-78847473 (+)
A/J	ENSMUSG00195019958	pseudogene	Chr8:79204037-79204188 (+)
AKR/J	ENSMUSG00220024077	pseudogene	Chr8:79244756-79244907 (+)
BALB/cJ	ENSMUSG00180021665	pseudogene	Chr8:79045992-79046143 (+)
C3H/HeJ	ENSMUSG00175011812	pseudogene	Chr8:79134918-79135069 (+)
C57BL/6NJ	ENSMUSG00215024657	pseudogene	Chr8:78770597-78770749 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037146	pseudogene	Chr8:78658585-78658737 (+)
CBA/J	ENSMUSG00210020686	pseudogene	Chr8:79127221-79127372 (+)
DBA/2J	ENSMUSG00185038173	pseudogene	Chr8:85236030-85236181 (+)
FVB/NJ	ENSMUSG00205039134	pseudogene	Chr8:78182097-78182249 (+)
JF1/MsJ	ENSUMUG00000038845	pseudogene	Chr8:87526797-87526949 (+)
LP/J	ENSMUSG00230030443	pseudogene	Chr8:88844174-88844325 (+)
NOD/ShiLtJ	ENSMUSG00190032311	pseudogene	Chr8:79193344-79193495 (+)
NZO/HlLtJ	ENSMUSG00225040804	pseudogene	Chr8:92231747-92231899 (+)
PWK/PhJ	ENSLUMG00010029511	pseudogene	Chr8:78884599-78884751 (+)
SPRET/EiJ	ENSMSPG00010024088	pseudogene	Chr8:80795918-80796070 (+)
WSB/EiJ	ENSIUOG00005016860	pseudogene	Chr8:79936570-79936721 (+)

Homology

• Gene Tree
  Gm45778
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000110570 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110570	Ensembl Gene Model | MGI Sequence Detail	153	C57BL/6J
transcript	ENSMUST00000211959	Ensembl | MGI Sequence Detail	153	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45778:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78298	Chr8:84475557-84475582 (+)	-563 bp
Tssr78299	Chr8:84475625-84475634 (+)	-503 bp