Gm45765 Gene Detail

Summary

• Symbol
  Gm45765
• Name
  predicted gene 45765

• Feature Type
  lncRNA gene
• IDs
  MGI:5804880
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:94090251-94157677 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  2033 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5804880	lncRNA gene	Chr8:94090251-94157677 (+)
129S1/SvImJ	ENSMUSG00200017683	lncRNA gene	Chr8:88438450-88507989 (+)
A/J	ENSMUSG00195029731	lncRNA gene	Chr8:88811649-88879083 (+)
AKR/J	ENSMUSG00220042798	lncRNA gene	Chr8:88809649-88879207 (+)
BALB/cJ	ENSMUSG00180024814	lncRNA gene	Chr8:88695566-88763001 (+)
C3H/HeJ	ENSMUSG00175027731	lncRNA gene	Chr8:88749791-88817224 (+)
C57BL/6NJ	ENSMUSG00215030730	lncRNA gene	Chr8:88361290-88428719 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017667	lncRNA gene	Chr8:88217364-88284703 (+)
CBA/J	ENSMUSG00210037046	lncRNA gene	Chr8:88689394-88756823 (+)
DBA/2J	ENSMUSG00185025105	lncRNA gene	Chr8:94798148-94865582 (+)
FVB/NJ	ENSMUSG00205017885	lncRNA gene	Chr8:87786350-87853785 (+)
JF1/MsJ	ENSUMUG00000046956	lncRNA gene	Chr8:97152028-97219455 (+)
LP/J	ENSMUSG00230031302	lncRNA gene	Chr8:98432237-98501771 (+)
NOD/ShiLtJ	ENSMUSG00190016470	lncRNA gene	Chr8:88792588-88861611 (+)
NZO/HlLtJ	ENSMUSG00225011942	lncRNA gene	Chr8:101838887-101906313 (+)
PWK/PhJ	ENSLUMG00010044371	lncRNA gene	Chr8:88489741-88564273 (+)
SPRET/EiJ	ENSMSPG00010034225	lncRNA gene	Chr8:90496713-90623445 (+)
WSB/EiJ	ENSIUOG00005019591	lncRNA gene	Chr8:89516415-89585658 (+)

Homology

• Gene Tree
  Gm45765
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000110718 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110718	Ensembl Gene Model | MGI Sequence Detail	67427	C57BL/6J
transcript	ENSMUST00000358580	Ensembl | MGI Sequence Detail	1457	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45765:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78790	Chr8:94125543-94125562 (+)	35,302 bp