Gm45604 Gene Detail

Summary

• Symbol
  Gm45604
• Name
  predicted gene 45604

• Feature Type
  lncRNA gene
• IDs
  MGI:5791440
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:125144738-125146564 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  222 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5791440	lncRNA gene	Chr10:125144738-125146564 (+)
129S1/SvImJ	ENSMUSG00200026901	lncRNA gene	Chr10:121491600-121493367 (+)
A/J	ENSMUSG00195023349	lncRNA gene	Chr10:121949339-121951106 (+)
AKR/J	ENSMUSG00220015037	lncRNA gene	Chr10:121560701-121562468 (+)
BALB/cJ	ENSMUSG00180018823	lncRNA gene	Chr10:121940560-121942327 (+)
C3H/HeJ	ENSMUSG00175025011	lncRNA gene	Chr10:121933853-121935620 (+)
C57BL/6NJ	ENSMUSG00215024236	lncRNA gene	Chr10:121560560-121562327 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034680	lncRNA gene	Chr10:120902300-120904357 (+)
CBA/J	ENSMUSG00210021632	lncRNA gene	Chr10:121769217-121770984 (+)
DBA/2J	ENSMUSG00185009849	lncRNA gene	Chr10:121899040-121900804 (+)
FVB/NJ	ENSMUSG00205026837	lncRNA gene	Chr10:121184545-121186312 (+)
JF1/MsJ	ENSUMUG00000046644	lncRNA gene	Chr10:123232091-123233859 (+)
LP/J	ENSMUSG00230034603	lncRNA gene	Chr10:123816685-123818449 (+)
NOD/ShiLtJ	ENSMUSG00190019109	lncRNA gene	Chr10:121981053-121982820 (+)
NZO/HlLtJ	ENSMUSG00225038106	lncRNA gene	Chr10:128039486-128041250 (+)
PWK/PhJ	ENSLUMG00010013758	lncRNA gene	Chr10:121657180-121658948 (+)
SPRET/EiJ	ENSMSPG00010037723	lncRNA gene	Chr10:123614698-123616464 (+)
WSB/EiJ	ENSIUOG00005013964	lncRNA gene	Chr10:121549774-121551538 (+)

Homology

• Gene Tree
  Gm45604
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000109803 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109803	Ensembl Gene Model | MGI Sequence Detail	1827	C57BL/6J
transcript	ENSMUST00000209665	Ensembl | MGI Sequence Detail	609	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45604:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96086	Chr10:125144837-125144844 (+)	103 bp
Tssr96087	Chr10:125144865-125144874 (+)	132 bp