Gm45552 Gene Detail

Summary

• Symbol
  Gm45552
• Name
  predicted gene 45552

• Feature Type
  lncRNA gene
• IDs
  MGI:5791388
  NCBI Gene: 118567527
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:44771242-44774196 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5791388	lncRNA gene	Chr7:44768305-44774196 (+)
129S1/SvImJ	ENSMUSG00200034359	lncRNA gene	Chr7:32368012-32370239 (+)
A/J	ENSMUSG00195050961	lncRNA gene	Chr7:36396091-36398318 (+)
AKR/J	ENSMUSG00220009037	lncRNA gene	Chr7:30701046-30703273 (+)
BALB/cJ	ENSMUSG00180042420	lncRNA gene	Chr7:33271500-33273727 (+)
C3H/HeJ	ENSMUSG00175041917	lncRNA gene	Chr7:33803945-33806172 (+)
C57BL/6NJ	ENSMUSG00215045150	lncRNA gene	Chr7:33064134-33066361 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047900	lncRNA gene	Chr7:36781617-36783844 (+)
CBA/J	ENSMUSG00210050016	lncRNA gene	Chr7:34175303-34177530 (+)
DBA/2J	ENSMUSG00185047637	lncRNA gene	Chr7:38047924-38050151 (+)
FVB/NJ	ENSMUSG00205049593	lncRNA gene	Chr7:33719664-33721891 (+)
JF1/MsJ	ENSUMUG00000054682	lncRNA gene	Chr7:42535199-42537437 (+)
LP/J	ENSMUSG00230051903	lncRNA gene	Chr7:43476860-43479087 (+)
NOD/ShiLtJ	ENSMUSG00190051934	lncRNA gene	Chr7:34047395-34049622 (+)
NZO/HlLtJ	ENSMUSG00225019172	lncRNA gene	Chr7:41685156-41687383 (+)
PWK/PhJ	ENSLUMG00010051036	lncRNA gene	Chr7:33003909-33006148 (+)
SPRET/EiJ	ENSMSPG00010046841	lncRNA gene	Chr7:32780958-32783192 (+)
WSB/EiJ	ENSIUOG00005032007	lncRNA gene	Chr7:34591912-34594139 (+)

Homology

• Gene Tree
  Gm45552
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  3

• Ensembl
  ENSMUSG00000110279 (Evidence)
• NCBI Gene
  118567527

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110279	Ensembl Gene Model | MGI Sequence Detail	2955	C57BL/6J
transcript	ENSMUST00000277839	Ensembl | MGI Sequence Detail	1673	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm45552:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66473	Chr7:44774021-44774047 (+)	2,792 bp