Gm45442 Gene Detail

Summary

• Symbol
  Gm45442
• Name
  predicted gene 45442

• Feature Type
  lncRNA gene
• IDs
  MGI:5791278
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:45571564-45573700 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5791278	lncRNA gene	Chr7:45571564-45573700 (-)
129S1/SvImJ	ENSMUSG00200033846	lncRNA gene	Chr7:33174817-33176776 (-)
A/J	ENSMUSG00195051618	lncRNA gene	Chr7:37202478-37204437 (-)
AKR/J	ENSMUSG00220009065	lncRNA gene	Chr7:31500850-31502809 (-)
BALB/cJ	ENSMUSG00180042607	lncRNA gene	Chr7:34077887-34079846 (-)
C3H/HeJ	ENSMUSG00175040632	lncRNA gene	Chr7:34610747-34612706 (-)
C57BL/6NJ	ENSMUSG00215047208	lncRNA gene	Chr7:33864533-33866492 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048889	lncRNA gene	Chr7:37608512-37610472 (-)
CBA/J	ENSMUSG00210049594	lncRNA gene	Chr7:34975496-34977455 (-)
DBA/2J	ENSMUSG00185048721	lncRNA gene	Chr7:38857539-38859498 (-)
FVB/NJ	ENSMUSG00205049232	lncRNA gene	Chr7:34520059-34522018 (-)
JF1/MsJ	ENSUMUG00000053913	lncRNA gene	Chr7:43337296-43339255 (-)
LP/J	ENSMUSG00230051811	lncRNA gene	Chr7:44291876-44293836 (-)
NOD/ShiLtJ	ENSMUSG00190051590	lncRNA gene	Chr7:34847758-34849717 (-)
NZO/HlLtJ	ENSMUSG00225018312	lncRNA gene	Chr7:42491056-42493015 (-)
PWK/PhJ	ENSLUMG00010049881	lncRNA gene	Chr7:33810064-33812023 (-)
SPRET/EiJ	ENSMSPG00010047046	lncRNA gene	Chr7:33576195-33578154 (-)
WSB/EiJ	ENSIUOG00005031840	lncRNA gene	Chr7:35395720-35397679 (-)

Homology

• Gene Tree
  Gm45442
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000110208 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110208	Ensembl Gene Model | MGI Sequence Detail	2137	C57BL/6J
transcript	ENSMUST00000254499	Ensembl | MGI Sequence Detail	1401	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45442:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2258	Chr7:45573533-45573544 (-)	161 bp
Tssr72502	Chr7:45572843-45572850 (-)	853 bp
Tssr72501	Chr7:45572612-45572621 (-)	1,083 bp
Tssr2257	Chr7:45572264-45572298 (-)	1,419 bp