Gm45420 Pseudogene Detail

Summary

• Symbol
  Gm45420
• Name
  predicted gene 45420

• Feature Type
  pseudogene
• IDs
  MGI:5791256
  NCBI Gene: 108167520
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:11764815-11765239 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5791256	pseudogene	Chr8:11764755-11765254 (-)
129S1/SvImJ	ENSMUSG00200013578	pseudogene	Chr8:8646784-8647208 (-)
A/J	ENSMUSG00195010764	pseudogene	Chr8:9006484-9006908 (-)
AKR/J	ENSMUSG00220011185	pseudogene	Chr8:8735740-8736164 (-)
BALB/cJ	ENSMUSG00180005109	pseudogene	Chr8:8645570-8645994 (-)
C3H/HeJ	ENSMUSG00175008554	pseudogene	Chr8:8805500-8805924 (-)
C57BL/6NJ	ENSMUSG00215009336	pseudogene	Chr8:8679832-8680256 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021597	pseudogene	Chr8:8643685-8644109 (-)
CBA/J	ENSMUSG00210011208	pseudogene	Chr8:8639369-8639793 (-)
DBA/2J	ENSMUSG00185004262	pseudogene	Chr8:8772136-8772560 (-)
FVB/NJ	ENSMUSG00205005871	pseudogene	Chr8:8664749-8665173 (-)
JF1/MsJ	ENSUMUG00000044115	pseudogene	Chr8:8794912-8795336 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011427	pseudogene	Chr8:8764288-8764712 (-)
NZO/HlLtJ	ENSMUSG00225018853	pseudogene	Chr8:18806818-18807242 (-)
PWK/PhJ	ENSLUMG00010011431	pseudogene	Chr8:8716931-8717355 (-)
SPRET/EiJ	ENSMSPG00010018935	pseudogene	Chr8:8842088-8842513 (-)
WSB/EiJ	ENSIUOG00005005098	pseudogene	Chr8:8655933-8656357 (-)

Homology

• Gene Tree
  Gm45420
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000110313 (Evidence)
• NCBI Gene
  108167520

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110313	Ensembl Gene Model | MGI Sequence Detail	425	C57BL/6J
transcript	ENSMUST00000211243	Ensembl | MGI Sequence Detail	425	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80398	Chr8:11765272-11765283 (-)	-39 bp