Gm45223 Gene Detail

Summary

• Symbol
  Gm45223
• Name
  predicted gene 45223

• Feature Type
  unclassified gene
• IDs
  MGI:5753799
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:89781700-89786837 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753799	unclassified gene	Chr7:89781700-89786837 (+)
129S1/SvImJ	ENSMUSG00200029291	unclassified gene	Chr7:76544735-76549872 (+)
A/J	ENSMUSG00195042893	unclassified gene	Chr7:81074962-81080093 (+)
AKR/J	ENSMUSG00220044277	unclassified gene	Chr7:74546010-74551141 (+)
BALB/cJ	ENSMUSG00180040304	unclassified gene	Chr7:77751281-77756412 (+)
C3H/HeJ	ENSMUSG00175038893	unclassified gene	Chr7:78441142-78446274 (+)
C57BL/6NJ	ENSMUSG00215032057	unclassified gene	Chr7:77617447-77622584 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032461	unclassified gene	Chr7:81050591-81055739 (+)
CBA/J	ENSMUSG00210044143	unclassified gene	Chr7:78283075-78288207 (+)
DBA/2J	ENSMUSG00185032564	unclassified gene	Chr7:82612678-82617810 (+)
FVB/NJ	ENSMUSG00205034635	unclassified gene	Chr7:78222521-78227658 (+)
JF1/MsJ	ENSUMUG00000021375	unclassified gene	Chr7:87547784-87553107 (+)
LP/J	ENSMUSG00230018555	unclassified gene	Chr7:88702112-88707244 (+)
NOD/ShiLtJ	ENSMUSG00190029474	unclassified gene	Chr7:78495624-78500755 (+)
NZO/HlLtJ	ENSMUSG00225011815	unclassified gene	Chr7:86976914-86982046 (+)
PWK/PhJ	ENSLUMG00010041014	unclassified gene	Chr7:76751751-76757073 (+)
SPRET/EiJ	ENSMSPG00010013097	unclassified gene	Chr7:77797944-77803078 (+)
WSB/EiJ	ENSIUOG00005035383	unclassified gene	Chr7:78873954-78879085 (+)

Homology

• Gene Tree
  Gm45223
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000109429 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109429	Ensembl Gene Model | MGI Sequence Detail	5138	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm45223:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67699	Chr7:89780315-89780342 (+)	-1,371 bp
Tssr67700	Chr7:89780397-89780401 (+)	-1,301 bp
Tssr67701	Chr7:89780786-89780835 (+)	-889 bp
Tssr67702	Chr7:89786798-89786813 (+)	5,106 bp