Gm45188 Gene Detail

Summary

• Symbol
  Gm45188
• Name
  predicted gene 45188

• Feature Type
  lncRNA gene
• IDs
  MGI:5753764
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:98545137-98548752 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753764	lncRNA gene	Chr7:98545137-98548752 (+)
129S1/SvImJ	ENSMUSG00200049810	lncRNA gene	Chr7:85366014-85368695 (+)
A/J	ENSMUSG00195039733	lncRNA gene	Chr7:89871018-89873699 (+)
AKR/J	ENSMUSG00220051416	lncRNA gene	Chr7:83287821-83290502 (+)
BALB/cJ	ENSMUSG00180036346	lncRNA gene	Chr7:86544398-86547079 (+)
C3H/HeJ	ENSMUSG00175024867	lncRNA gene	Chr7:87190088-87193686 (+)
C57BL/6NJ	ENSMUSG00215037739	lncRNA gene	Chr7:86388817-86392438 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032702	lncRNA gene	Chr7:89779864-89783480 (+)
CBA/J	ENSMUSG00210025904	lncRNA gene	Chr7:87043919-87047517 (+)
DBA/2J	ENSMUSG00185057012	lncRNA gene	Chr7:91364789-91368387 (+)
FVB/NJ	ENSMUSG00205040657	lncRNA gene	Chr7:87042730-87045411 (+)
JF1/MsJ	ENSUMUG00000049702	lncRNA gene	Chr7:96270543-96274164 (+)
LP/J	ENSMUSG00230045128	lncRNA gene	Chr7:97484539-97487220 (+)
NOD/ShiLtJ	ENSMUSG00190021189	lncRNA gene	Chr7:87317477-87321082 (+)
NZO/HlLtJ	ENSMUSG00225051011	lncRNA gene	Chr7:95668083-95671690 (+)
PWK/PhJ	ENSLUMG00010050214	lncRNA gene	Chr7:85493649-85497275 (+)
SPRET/EiJ	ENSMSPG00010012793	lncRNA gene	Chr7:86737063-86740634 (+)
WSB/EiJ	ENSIUOG00005010717	lncRNA gene	Chr7:87657953-87661570 (+)

Homology

• Gene Tree
  Gm45188
  

Expression

• Assay Results
  625
• Tissues
  26
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000109282 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109282	Ensembl Gene Model | MGI Sequence Detail	3616	C57BL/6J
transcript	ENSMUST00000207592	Ensembl | MGI Sequence Detail	1369	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 3

  Developmental Gene Expression 1
• Earliest
  J:330442 Garcia-Padilla C, et al., Identification of atrial-enriched lncRNA Walras linked to cardiomyocyte cytoarchitecture and atrial fibrillation. FASEB J. 2022 Jan;36(1):e22051

TSS for Gm45188:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68039	Chr7:98545135-98545140 (+)	1 bp