Gm44995 Gene Detail

Summary

• Symbol
  Gm44995
• Name
  predicted gene 44995

• Feature Type
  lncRNA gene
• IDs
  MGI:5753571
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:88987578-88995705 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  229 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753571	lncRNA gene	Chr7:88987578-88995705 (+)
129S1/SvImJ	ENSMUSG00200028972	lncRNA gene	Chr7:75791466-75799345 (+)
A/J	ENSMUSG00195042407	lncRNA gene	Chr7:80315702-80323610 (+)
AKR/J	ENSMUSG00220042607	lncRNA gene	Chr7:73786030-73793936 (+)
BALB/cJ	ENSMUSG00180041330	lncRNA gene	Chr7:76992664-77000570 (+)
C3H/HeJ	ENSMUSG00175037555	lncRNA gene	Chr7:77679833-77687712 (+)
C57BL/6NJ	ENSMUSG00215033697	lncRNA gene	Chr7:76823141-76831060 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046939	lncRNA gene	Chr7:80308643-80316518 (+)
CBA/J	ENSMUSG00210041475	lncRNA gene	Chr7:77521821-77529700 (+)
DBA/2J	ENSMUSG00185033199	lncRNA gene	Chr7:81851355-81859234 (+)
FVB/NJ	ENSMUSG00205039714	lncRNA gene	Chr7:77470782-77478687 (+)
JF1/MsJ	ENSUMUG00000026650	lncRNA gene	Chr7:86790264-86798165 (+)
LP/J	ENSMUSG00230018053	lncRNA gene	Chr7:87940953-87948832 (+)
NOD/ShiLtJ	ENSMUSG00190029018	lncRNA gene	Chr7:77736768-77744675 (+)
NZO/HlLtJ	ENSMUSG00225011652	lncRNA gene	Chr7:86215624-86223504 (+)
PWK/PhJ	ENSLUMG00010040976	lncRNA gene	Chr7:75968731-75976615 (+)
SPRET/EiJ	ENSMSPG00010013008	lncRNA gene	Chr7:77030451-77038529 (+)
WSB/EiJ	ENSIUOG00005034053	lncRNA gene	Chr7:78075747-78083649 (+)

Homology

• Gene Tree
  Gm44995
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000109327 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109327	Ensembl Gene Model | MGI Sequence Detail	8128	C57BL/6J
transcript	ENSMUST00000308088	Ensembl | MGI Sequence Detail	618	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44995:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2323	Chr7:88987626-88987630 (+)	50 bp