Gm44955 Gene Detail

Summary

• Symbol
  Gm44955
• Name
  predicted gene 44955

• Feature Type
  lncRNA gene
• IDs
  MGI:5753531
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:10963517-10997890 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  1094 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753531	lncRNA gene	Chr8:10963517-10997890 (-)
129S1/SvImJ	ENSMUSG00200013687	lncRNA gene	Chr8:7875125-7879694 (-)
A/J	ENSMUSG00195011238	lncRNA gene	Chr8:8234572-8239149 (-)
AKR/J	ENSMUSG00220011773	lncRNA gene	Chr8:7963829-7968404 (-)
BALB/cJ	ENSMUSG00180005007	lncRNA gene	Chr8:7873647-7878218 (-)
C3H/HeJ	ENSMUSG00175008343	lncRNA gene	Chr8:8026536-8031112 (-)
C57BL/6NJ	ENSMUSG00215010493	lncRNA gene	Chr8:7907960-7912521 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020683	lncRNA gene	Chr8:7859339-7863950 (-)
CBA/J	ENSMUSG00210011123	lncRNA gene	Chr8:7867530-7872105 (-)
DBA/2J	ENSMUSG00185004404	lncRNA gene	Chr8:8000317-8004888 (-)
FVB/NJ	ENSMUSG00205005918	lncRNA gene	Chr8:7885771-7890352 (-)
JF1/MsJ	ENSUMUG00000045560	lncRNA gene	Chr8:8015975-8020656 (-)
LP/J	ENSMUSG00230023801	lncRNA gene	Chr8:10178039-10182612 (-)
NOD/ShiLtJ	ENSMUSG00190011846	lncRNA gene	Chr8:7985358-7989937 (-)
NZO/HlLtJ	ENSMUSG00225019372	lncRNA gene	Chr8:18035166-18039739 (-)
PWK/PhJ	ENSLUMG00010011727	lncRNA gene	Chr8:7934624-7939291 (-)
SPRET/EiJ	ENSMSPG00010017774	lncRNA gene	Chr8:8065117-8069731 (-)
WSB/EiJ	ENSIUOG00005004875	lncRNA gene	Chr8:7884224-7888778 (-)

Homology

• Gene Tree
  Gm44955
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54

• Ensembl
  ENSMUSG00000109084 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109084	Ensembl Gene Model | MGI Sequence Detail	34374	C57BL/6J
transcript	ENSMUST00000295439	Ensembl | MGI Sequence Detail	3666	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44955:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80354	Chr8:10997853-10997862 (-)	32 bp
Tssr80353	Chr8:10997821-10997845 (-)	57 bp
Tssr80352	Chr8:10997806-10997820 (-)	77 bp