Gm44930 Gene Detail

Summary

• Symbol
  Gm44930
• Name
  predicted gene 44930

• Feature Type
  lncRNA gene
• IDs
  MGI:5753506
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:144295803-144324309 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  573 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753506	lncRNA gene	Chr7:144295803-144324309 (+)
129S1/SvImJ	ENSMUSG00200047534	lncRNA gene	Chr7:130860569-130868464 (+)
A/J	ENSMUSG00195001774	lncRNA gene	Chr7:135343945-135351842 (+)
AKR/J	ENSMUSG00220037874	lncRNA gene	Chr7:128821113-128828950 (+)
BALB/cJ	ENSMUSG00180043261	lncRNA gene	Chr7:132033967-132041804 (+)
C3H/HeJ	ENSMUSG00175004064	lncRNA gene	Chr7:132765007-132772903 (+)
C57BL/6NJ	ENSMUSG00215047332	lncRNA gene	Chr7:132031232-132039129 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002895	lncRNA gene	Chr7:135359894-135367686 (+)
CBA/J	ENSMUSG00210003770	lncRNA gene	Chr7:132522509-132530405 (+)
DBA/2J	ENSMUSG00185018254	lncRNA gene	Chr7:136801315-136809211 (+)
FVB/NJ	ENSMUSG00205002147	lncRNA gene	Chr7:132429416-132437313 (+)
JF1/MsJ	ENSUMUG00000002127	lncRNA gene	Chr7:141828535-141836394 (+)
LP/J	ENSMUSG00230007971	lncRNA gene	Chr7:142963000-142970895 (+)
NOD/ShiLtJ	ENSMUSG00190003948	lncRNA gene	Chr7:132630160-132638055 (+)
NZO/HlLtJ	ENSMUSG00225053251	lncRNA gene	Chr7:141173483-141181378 (+)
PWK/PhJ	ENSLUMG00010048610	lncRNA gene	Chr7:130998013-131005857 (+)
SPRET/EiJ	ENSMSPG00010001039	lncRNA gene	Chr7:132564693-132572590 (+)
WSB/EiJ	ENSIUOG00005000928	lncRNA gene	Chr7:133425979-133433814 (+)

Homology

• Gene Tree
  Gm44930
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm44930
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000108851 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108851	Ensembl Gene Model | MGI Sequence Detail	28507	C57BL/6J
transcript	ENSMUST00000209134	Ensembl | MGI Sequence Detail	1722	Not Applicable

References

• Summaries
  All 5

  Diseases 1

  Phenotypes 3
• Earliest
  J:8618 Theiler K, et al., Low set ears (Lse), a new mutation of the house mouse. Anat Embryol (Berl). 1986;175(2):241-6
• Latest
  J:338204 Luzzio A, et al., The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4. Mamm Genome. 2023 Jun 21;

TSS for Gm44930:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70349	Chr7:144295794-144295806 (+)	-3 bp
Tssr70350	Chr7:144295812-144295820 (+)	13 bp
Tssr70351	Chr7:144295824-144295836 (+)	27 bp
Tssr70352	Chr7:144295846-144295853 (+)	47 bp