Gm44777 Gene Detail

Summary

• Symbol
  Gm44777
• Name
  predicted gene 44777

• Feature Type
  lncRNA gene
• IDs
  MGI:5753353
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:115933490-115937868 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753353	lncRNA gene	Chr7:115933490-115937868 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004496	antisense lncRNA gene	Chr7:120071935-120076320 (+)
A/J	MGP_AJ_G0004476	antisense lncRNA gene	Chr7:117055388-117059788 (+)
AKR/J	MGP_AKRJ_G0004459	antisense lncRNA gene	Chr7:120024734-120029090 (+)
BALB/cJ	MGP_BALBcJ_G0004461	antisense lncRNA gene	Chr7:116777683-116782899 (+)
C3H/HeJ	MGP_C3HHeJ_G0004410	antisense lncRNA gene	Chr7:119958608-119963647 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004611	antisense lncRNA gene	Chr7:124881925-124886264 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004066	antisense lncRNA gene	Chr7:118572988-118577486 (+)
CAST/EiJ	MGP_CASTEiJ_G0004370	antisense lncRNA gene	Chr7:111645964-111651595 (+)
CBA/J	MGP_CBAJ_G0004405	antisense lncRNA gene	Chr7:129023611-129027944 (+)
DBA/2J	MGP_DBA2J_G0004419	antisense lncRNA gene	Chr7:115108642-115113169 (+)
FVB/NJ	MGP_FVBNJ_G0004436	antisense lncRNA gene	Chr7:114959014-114963567 (+)
LP/J	MGP_LPJ_G0004500	antisense lncRNA gene	Chr7:121557464-121563842 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004425	antisense lncRNA gene	Chr7:130635585-130640621 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004610	antisense lncRNA gene	Chr7:119016180-119021477 (+)
PWK/PhJ	MGP_PWKPhJ_G0004323	antisense lncRNA gene	Chr7:107985315-107989752 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004264	antisense lncRNA gene	Chr7:105749202-105753358 (+)
WSB/EiJ	MGP_WSBEiJ_G0004409	antisense lncRNA gene	Chr7:119894063-119898475 (+)

Homology

• Gene Tree
  Gm44777
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000108738 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108738	Ensembl Gene Model | MGI Sequence Detail	4379	C57BL/6J
transcript	ENSMUST00000205941	Ensembl | MGI Sequence Detail	4052	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44777:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68690	Chr7:115933479-115933503 (+)	1 bp