Gm44691 Gene Detail

Summary

• Symbol
  Gm44691
• Name
  predicted gene 44691

• Feature Type
  lncRNA gene
• IDs
  MGI:5753267
  NCBI Gene: 118567468
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:68628915-68657922 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  702 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753267	lncRNA gene	Chr7:68565804-68657933 (+)
129S1/SvImJ	ENSMUSG00200013211	lncRNA gene	Chr7:55343798-55394587 (+)
A/J	ENSMUSG00195013188	lncRNA gene	Chr7:59768382-59796896 (+)
AKR/J	ENSMUSG00220020677	lncRNA gene	Chr7:53269026-53300430 (+)
BALB/cJ	ENSMUSG00180004635	lncRNA gene	Chr7:56478253-56506768 (+)
C3H/HeJ	ENSMUSG00175011276	lncRNA gene	Chr7:57270744-57299257 (+)
C57BL/6NJ	ENSMUSG00215022296	lncRNA gene	Chr7:56406493-56435235 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012275	lncRNA gene	Chr7:59967421-59989553 (+)
CBA/J	ENSMUSG00210019899	lncRNA gene	Chr7:57109170-57137685 (+)
DBA/2J	ENSMUSG00185001025	lncRNA gene	Chr7:61461466-61483616 (+)
FVB/NJ	ENSMUSG00205005207	lncRNA gene	Chr7:57113165-57141913 (+)
JF1/MsJ	ENSUMUG00000012272	lncRNA gene	Chr7:66184592-66210808 (+)
LP/J	ENSMUSG00230022000	lncRNA gene	Chr7:67536049-67564796 (+)
NOD/ShiLtJ	ENSMUSG00190007551	lncRNA gene	Chr7:57217467-57245980 (+)
NZO/HlLtJ	ENSMUSG00225017638	lncRNA gene	Chr7:65827704-65849854 (+)
PWK/PhJ	ENSLUMG00010018884	lncRNA gene	Chr7:55741633-55767855 (+)
SPRET/EiJ	ENSMSPG00010003457	lncRNA gene	Chr7:56099001-56118951 (+)
WSB/EiJ	ENSIUOG00005005651	lncRNA gene	Chr7:57638943-57667480 (+)

Homology

• Gene Tree
  Gm44691
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000109524 (Evidence)
• NCBI Gene
  118567468

Representative Sequences			Length	Strain/Species
genomic	118567468	NCBI Gene Model | MGI Sequence Detail	29008	C57BL/6J
transcript	XR_004934235	RefSeq | MGI Sequence Detail	2050	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44691:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67157	Chr7:68629189-68629200 (+)	280 bp