Gm44686 Gene Detail

Summary

• Symbol
  Gm44686
• Name
  predicted gene 44686

• Feature Type
  lncRNA gene
• IDs
  MGI:5753262
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:73187761-73204549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753262	lncRNA gene	Chr7:73187761-73204549 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004462	antisense lncRNA gene	Chr7:75101484-75118310 (+)
A/J	MGP_AJ_G0004442	antisense lncRNA gene	Chr7:73416356-73433124 (+)
AKR/J	MGP_AKRJ_G0004425	antisense lncRNA gene	Chr7:74949184-74965938 (+)
BALB/cJ	MGP_BALBcJ_G0004427	antisense lncRNA gene	Chr7:73166622-73184024 (+)
C3H/HeJ	MGP_C3HHeJ_G0004376	antisense lncRNA gene	Chr7:75720094-75736860 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004578	antisense lncRNA gene	Chr7:78207326-78225285 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004032	antisense lncRNA gene	Chr7:76047788-76064584 (+)
CAST/EiJ	MGP_CASTEiJ_G0004336	antisense lncRNA gene	Chr7:66536366-66553079 (+)
CBA/J	MGP_CBAJ_G0004371	antisense lncRNA gene	Chr7:80746941-80763690 (+)
DBA/2J	MGP_DBA2J_G0004385	antisense lncRNA gene	Chr7:72077241-72096083 (+)
FVB/NJ	MGP_FVBNJ_G0004402	antisense lncRNA gene	Chr7:72131407-72148747 (+)
LP/J	MGP_LPJ_G0004466	antisense lncRNA gene	Chr7:76328345-76345726 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0004576	antisense lncRNA gene	Chr7:74423976-74440760 (+)
PWK/PhJ	MGP_PWKPhJ_G0004289	antisense lncRNA gene	Chr7:65238805-65255950 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004230	antisense lncRNA gene	Chr7:61491130-61509244 (+)
WSB/EiJ	MGP_WSBEiJ_G0004375	antisense lncRNA gene	Chr7:74765748-74783019 (+)

Homology

• Gene Tree
  Gm44686
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000108563 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108563	Ensembl Gene Model | MGI Sequence Detail	16789	C57BL/6J
transcript	ENSMUST00000206776	Ensembl | MGI Sequence Detail	540	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm44686:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67202	Chr7:73187695-73187718 (+)	-54 bp
Tssr67203	Chr7:73187759-73187806 (+)	22 bp
Tssr67204	Chr7:73187812-73187840 (+)	65 bp
Tssr67205	Chr7:73189112-73189126 (+)	1,358 bp