Gm44596 Gene Detail

Summary

• Symbol
  Gm44596
• Name
  predicted gene 44596

• Feature Type
  protein coding gene
• IDs
  MGI:5753172
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:128352466-128384438 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753172	protein coding gene	Chr6:128352466-128384438 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031324	protein coding gene	Chr6:131976589-132016869 (+)
A/J	MGP_AJ_G0031295	protein coding gene	Chr6:126918626-126950264 (+)
AKR/J	MGP_AKRJ_G0031223	protein coding gene	Chr6:130333436-130367109 (+)
BALB/cJ	MGP_BALBcJ_G0031302	protein coding gene	Chr6:126494000-126525465 (+)
C3H/HeJ	MGP_C3HHeJ_G0031026	protein coding gene	Chr6:130474422-130506729 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0031761	protein coding gene	Chr6:135413633-135448218 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028907	protein coding gene	Chr6:124122396-124159740 (+)
CAST/EiJ	MGP_CASTEiJ_G0030407	protein coding gene	Chr6:130762270-130799765 (+)
CBA/J	MGP_CBAJ_G0030987	protein coding gene	Chr6:140639642-140674024 (+)
DBA/2J	MGP_DBA2J_G0031143	protein coding gene	Chr6:125811979-125848119 (+)
FVB/NJ	MGP_FVBNJ_G0031093	protein coding gene	Chr6:124742388-124776195 (+)
LP/J	MGP_LPJ_G0031223	protein coding gene	Chr6:132100181-132135255 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031131	protein coding gene	Chr6:144478141-144512014 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031794	protein coding gene	Chr6:130349329-130381935 (+)
PWK/PhJ	MGP_PWKPhJ_G0030122	protein coding gene	Chr6:124109360-124142507 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0029951	protein coding gene	Chr6:128468824-128503800 (+)
WSB/EiJ	MGP_WSBEiJ_G0030492	protein coding gene	Chr6:130745092-130778327 (+)

Homology

• Gene Tree
  Gm44596
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000108011 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108011	Ensembl Gene Model | MGI Sequence Detail	31973	C57BL/6J
transcript	ENSMUST00000204223	Ensembl | MGI Sequence Detail	647	Not Applicable
polypeptide	ENSMUSP00000145012	Ensembl | MGI Sequence Detail	210	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR021109 Aspartic peptidase domain superfamily

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm44596:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59061	Chr6:128352427-128352475 (+)	-15 bp