Gm44287 Gene Detail

Summary

• Symbol
  Gm44287
• Name
  predicted gene, 44287

• Feature Type
  lncRNA gene
• IDs
  MGI:5690679
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:83099501-83101378 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690679	lncRNA gene	Chr6:83099501-83101378 (+)
129S1/SvImJ	ENSMUSG00200012647	lncRNA gene	Chr6:80068972-80070842 (+)
A/J	ENSMUSG00195012440	lncRNA gene	Chr6:79745925-79747807 (+)
AKR/J	ENSMUSG00220002099	lncRNA gene	Chr6:78689339-78691221 (+)
BALB/cJ	ENSMUSG00180010604	lncRNA gene	Chr6:80121931-80123813 (+)
C3H/HeJ	ENSMUSG00175040833	lncRNA gene	Chr6:97286548-97288425 (-)
C57BL/6NJ	ENSMUSG00215018796	lncRNA gene	Chr6:80119095-80120972 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003883	antisense lncRNA gene	Chr6:79272707-79274759 (+)
CAST/EiJ	ENSTCUG00005008333	lncRNA gene	Chr6:80132150-80134048 (+)
CBA/J	ENSMUSG00210011405	lncRNA gene	Chr6:79937466-79939343 (+)
DBA/2J	ENSMUSG00185001031	lncRNA gene	Chr6:80484528-80486405 (+)
FVB/NJ	ENSMUSG00205026194	lncRNA gene	Chr6:79163618-79165502 (+)
JF1/MsJ	ENSUMUG00000021291	lncRNA gene	Chr6:79537641-79539547 (+)
LP/J	ENSMUSG00230050705	lncRNA gene	Chr6:81626224-81628094 (+)
NOD/ShiLtJ	ENSMUSG00190001830	lncRNA gene	Chr6:79566738-79568620 (+)
NZO/HlLtJ	ENSMUSG00225020462	lncRNA gene	Chr6:83534219-83536125 (+)
PWK/PhJ	ENSLUMG00010006603	lncRNA gene	Chr6:78888519-78890412 (+)
SPRET/EiJ	ENSMSPG00010044442	lncRNA gene	Chr6:81042256-81044083 (+)
WSB/EiJ	ENSIUOG00005019274	lncRNA gene	Chr6:80504479-80506361 (+)

Homology

• Gene Tree
  Gm44287
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm44287
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108109 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108109	Ensembl Gene Model | MGI Sequence Detail	1878	C57BL/6J
transcript	ENSMUST00000203069	Ensembl | MGI Sequence Detail	290	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm44287:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57298	Chr6:83098686-83098711 (+)	-802 bp
Tssr57299	Chr6:83098715-83098732 (+)	-777 bp