Gm44206 Gene Detail

Summary

• Symbol
  Gm44206
• Name
  predicted gene, 44206

• Feature Type
  lncRNA gene
• IDs
  MGI:5690598
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:115801460-115819486 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690598	lncRNA gene	Chr6:115801460-115819486 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004344	antisense lncRNA gene	Chr6:118480525-118486823 (+)
A/J	MGP_AJ_G0004321	antisense lncRNA gene	Chr6:113932178-113940021 (+)
AKR/J	MGP_AKRJ_G0004304	antisense lncRNA gene	Chr6:116990121-116996542 (+)
BALB/cJ	MGP_BALBcJ_G0004307	antisense lncRNA gene	Chr6:113738293-113744585 (+)
C3H/HeJ	MGP_C3HHeJ_G0004197	antisense lncRNA gene	Chr6:67304666-67311073 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004457	antisense lncRNA gene	Chr6:121503526-121509826 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003924	antisense lncRNA gene	Chr6:110934828-110941263 (+)
CAST/EiJ	MGP_CASTEiJ_G0004218	antisense lncRNA gene	Chr6:117363544-117370180 (+)
CBA/J	MGP_CBAJ_G0004250	antisense lncRNA gene	Chr6:126272214-126282181 (+)
DBA/2J	MGP_DBA2J_G0004265	antisense lncRNA gene	Chr6:112853635-112859917 (+)
FVB/NJ	MGP_FVBNJ_G0004282	antisense lncRNA gene	Chr6:112032698-112039001 (+)
LP/J	MGP_LPJ_G0004345	antisense lncRNA gene	Chr6:118490850-118497141 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004273	antisense lncRNA gene	Chr6:130440390-130446681 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004454	antisense lncRNA gene	Chr6:117012860-117019144 (+)
PWK/PhJ	MGP_PWKPhJ_G0004171	antisense lncRNA gene	Chr6:111869050-111876104 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004114	antisense lncRNA gene	Chr6:115729972-115737229 (+)
WSB/EiJ	MGP_WSBEiJ_G0004255	antisense lncRNA gene	Chr6:117276498-117282775 (+)

Homology

• Gene Tree
  Gm44206
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107429 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107429	Ensembl Gene Model | MGI Sequence Detail	18027	C57BL/6J
transcript	ENSMUST00000203044	Ensembl | MGI Sequence Detail	592	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;