Gm44140 Gene Detail

Summary

• Symbol
  Gm44140
• Name
  predicted gene, 44140

• Feature Type
  lncRNA gene
• IDs
  MGI:5690532
  NCBI Gene: 108169174
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr6:136465107-136495714 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1025 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690532	lncRNA gene	Chr6:136459973-136496085 (-)
129S1/SvImJ	ENSMUSG00200033399	lncRNA gene	Chr6:134019456-134023489 (-)
A/J	ENSMUSG00195008730	lncRNA gene	Chr6:132861822-132865856 (-)
AKR/J	ENSMUSG00220041883	lncRNA gene	Chr6:131089928-131093961 (-)
BALB/cJ	ENSMUSG00180017185	lncRNA gene	Chr6:132973807-132977841 (-)
C3H/HeJ	ENSMUSG00175037026	lncRNA gene	Chr6:132882032-132886065 (-)
C57BL/6NJ	ENSMUSG00215026879	lncRNA gene	Chr6:133127884-133131939 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004313	bidirectional promoter lncRNA gene	Chr6:134525655-134529857 (-)
CAST/EiJ	ENSTCUG00005036570	lncRNA gene	Chr6:133805790-133809857 (-)
CBA/J	ENSMUSG00210005596	lncRNA gene	Chr6:132934356-132938389 (-)
DBA/2J	ENSMUSG00185023588	lncRNA gene	Chr6:133596639-133600672 (-)
FVB/NJ	ENSMUSG00205042397	lncRNA gene	Chr6:132089481-132093519 (-)
JF1/MsJ	ENSUMUG00000045770	lncRNA gene	Chr6:132308149-132312204 (-)
LP/J	ENSMUSG00230009682	lncRNA gene	Chr6:134815903-134819936 (-)
NOD/ShiLtJ	ENSMUSG00190006929	lncRNA gene	Chr6:133434862-133438895 (-)
NZO/HlLtJ	ENSMUSG00225007689	lncRNA gene	Chr6:137637108-137641142 (-)
PWK/PhJ	ENSLUMG00010042949	lncRNA gene	Chr6:131391302-131395355 (-)
SPRET/EiJ	ENSMSPG00010036431	lncRNA gene	Chr6:135284906-135289099 (-)
WSB/EiJ	ENSIUOG00005022578	lncRNA gene	Chr6:133754811-133758845 (-)

Homology

• Gene Tree
  Gm44140
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  7

• Ensembl
  ENSMUSG00000107702 (Evidence)
• NCBI Gene
  108169174

Representative Sequences			Length	Strain/Species
genomic	108169174	NCBI Gene Model | MGI Sequence Detail	30608	C57BL/6J
transcript	XR_001785395	RefSeq | MGI Sequence Detail	1038	C57BL/6J

References

• Summaries
  All 6
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm44140:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63805	Chr6:136496056-136496075 (-)	-352 bp
Tssr63804	Chr6:136495759-136495770 (-)	-51 bp
Tssr63803	Chr6:136495496-136495499 (-)	216 bp
Tssr63802	Chr6:136476714-136476718 (-)	18,998 bp
Tssr63801	Chr6:136474894-136474898 (-)	20,818 bp