Gm44127 Gene Detail

Summary

• Symbol
  Gm44127
• Name
  predicted gene, 44127

• Feature Type
  lncRNA gene
• IDs
  MGI:5690519
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:84202015-84273476 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1872 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690519	lncRNA gene	Chr6:84202015-84273476 (+)
129S1/SvImJ	ENSMUSG00200012753	lncRNA gene	Chr6:81171816-81233374 (+)
A/J	ENSMUSG00195012561	lncRNA gene	Chr6:80856171-80917727 (+)
AKR/J	ENSMUSG00220002106	lncRNA gene	Chr6:79800316-79861839 (+)
BALB/cJ	ENSMUSG00180010053	lncRNA gene	Chr6:81226618-81288186 (+)
C3H/HeJ	ENSMUSG00175039733	lncRNA gene	Chr6:96123734-96185303 (-)
C57BL/6NJ	ENSMUSG00215018961	lncRNA gene	Chr6:81222277-81283835 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006377	lincRNA gene	Chr6:80396039-80454796 (+)
CAST/EiJ	ENSTCUG00005008644	lncRNA gene	Chr6:81223671-81282618 (+)
CBA/J	ENSMUSG00210011641	lncRNA gene	Chr6:81040473-81102027 (+)
DBA/2J	ENSMUSG00185047469	lncRNA gene	Chr6:81587600-81649153 (+)
FVB/NJ	ENSMUSG00205029349	lncRNA gene	Chr6:80268232-80329782 (+)
JF1/MsJ	ENSUMUG00000023079	lncRNA gene	Chr6:80641634-80701943 (+)
LP/J	ENSMUSG00230050655	lncRNA gene	Chr6:82728966-82790523 (+)
NOD/ShiLtJ	ENSMUSG00190001934	lncRNA gene	Chr6:80671256-80732809 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006883	lncRNA gene	Chr6:79988502-80046432 (+)
SPRET/EiJ	ENSMSPG00010046122	lncRNA gene	Chr6:82123466-82183476 (+)
WSB/EiJ	ENSIUOG00005019621	lncRNA gene	Chr6:81605802-81666814 (+)

Homology

• Gene Tree
  Gm44127
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm44127
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000107538 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107538	Ensembl Gene Model | MGI Sequence Detail	71462	C57BL/6J
transcript	ENSMUST00000351187	Ensembl | MGI Sequence Detail	991	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48