Gm44097 Gene Detail

Summary

• Symbol
  Gm44097
• Name
  predicted gene, 44097

• Feature Type
  lncRNA gene
• IDs
  MGI:5690489
  NCBI Gene: 115490358
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:87634728-87640671 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690489	lncRNA gene	Chr6:87634714-87641332 (+)
129S1/SvImJ	ENSMUSG00200044636	lncRNA gene	Chr6:84574990-84581059 (+)
A/J	ENSMUSG00195039929	lncRNA gene	Chr6:84278211-84284280 (+)
AKR/J	ENSMUSG00220034787	lncRNA gene	Chr6:83185363-83191421 (+)
BALB/cJ	ENSMUSG00180018843	lncRNA gene	Chr6:84658538-84664596 (+)
C3H/HeJ	ENSMUSG00175040030	lncRNA gene	Chr6:92740135-92746204 (-)
C57BL/6NJ	ENSMUSG00215034784	lncRNA gene	Chr6:84661179-84667249 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003894	antisense lncRNA gene	Chr6:83757720-83763646 (+)
CAST/EiJ	ENSTCUG00005018823	lncRNA gene	Chr6:84593525-84599500 (+)
CBA/J	ENSMUSG00210046953	lncRNA gene	Chr6:84474244-84480313 (+)
DBA/2J	ENSMUSG00185044431	lncRNA gene	Chr6:85021377-85027448 (+)
FVB/NJ	ENSMUSG00205043893	lncRNA gene	Chr6:83647033-83653102 (+)
JF1/MsJ	ENSUMUG00000050213	lncRNA gene	Chr6:83958093-83964061 (+)
LP/J	ENSMUSG00230050393	lncRNA gene	Chr6:86155545-86161619 (+)
NOD/ShiLtJ	ENSMUSG00190045951	lncRNA gene	Chr6:84092721-84098792 (+)
NZO/HlLtJ	ENSMUSG00225020911	lncRNA gene	Chr6:88118977-88125009 (+)
PWK/PhJ	ENSLUMG00010038012	lncRNA gene	Chr6:83373594-83379589 (+)
SPRET/EiJ	ENSMSPG00010044327	lncRNA gene	Chr6:85513824-85519899 (+)
WSB/EiJ	ENSIUOG00005035813	lncRNA gene	Chr6:85005027-85011095 (+)

Homology

• Gene Tree
  Gm44097
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000107593 (Evidence)
• NCBI Gene
  115490358

Representative Sequences			Length	Strain/Species
genomic	115490358	NCBI Gene Model | MGI Sequence Detail	5944	C57BL/6J
transcript	XR_003956328	RefSeq | MGI Sequence Detail	619	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm44097:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57546	Chr6:87634730-87634741 (+)	8 bp
Tssr57547	Chr6:87634759-87634766 (+)	35 bp