Gm44096 Gene Detail

Summary

• Symbol
  Gm44096
• Name
  predicted gene, 44096

• Feature Type
  lncRNA gene
• IDs
  MGI:5690488
  NCBI Gene: 115490373
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:124469110-124471327 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690488	lncRNA gene	Chr6:124469110-124471359 (-)
129S1/SvImJ	ENSMUSG00200051749	lncRNA gene	Chr6:121530472-121532677 (-)
A/J	ENSMUSG00195048978	lncRNA gene	Chr6:120988863-120991070 (-)
AKR/J	ENSMUSG00220034334	lncRNA gene	Chr6:119850454-119852660 (-)
BALB/cJ	ENSMUSG00180050024	lncRNA gene	Chr6:121327468-121329675 (-)
C3H/HeJ	ENSMUSG00175050467	lncRNA gene	Chr6:120988906-120991115 (-)
C57BL/6NJ	ENSMUSG00215049576	lncRNA gene	Chr6:121294170-121296375 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051327	lncRNA gene	Chr6:121168320-121170489 (-)
CBA/J	ENSMUSG00210047484	lncRNA gene	Chr6:121085789-121087996 (-)
DBA/2J	ENSMUSG00185043634	lncRNA gene	Chr6:121727599-121729808 (-)
FVB/NJ	ENSMUSG00205051901	lncRNA gene	Chr6:120442260-120444465 (-)
JF1/MsJ	ENSUMUG00000054387	lncRNA gene	Chr6:120135557-120137748 (-)
LP/J	ENSMUSG00230044038	lncRNA gene	Chr6:122923637-122925844 (-)
NOD/ShiLtJ	ENSMUSG00190052027	lncRNA gene	Chr6:120699206-120701415 (-)
NZO/HlLtJ	ENSMUSG00225017977	lncRNA gene	Chr6:124819797-124824877 (-)
PWK/PhJ	ENSLUMG00010050814	lncRNA gene	Chr6:119401749-119403954 (-)
SPRET/EiJ	ENSMSPG00010042659	lncRNA gene	Chr6:122274524-122276726 (-)
WSB/EiJ	ENSIUOG00005045262	lncRNA gene	Chr6:121407487-121409666 (-)

Homology

• Gene Tree
  Gm44096
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000107552 (Evidence)
• NCBI Gene
  115490373

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107552	Ensembl Gene Model | MGI Sequence Detail	2218	C57BL/6J
transcript	ENSMUST00000317909	Ensembl | MGI Sequence Detail	753	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm44096:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr63094	Chr6:124473061-124473066 (-)	-1,737 bp