Gm44040 Gene Detail

Summary

• Symbol
  Gm44040
• Name
  predicted gene, 44040

• Feature Type
  lncRNA gene
• IDs
  MGI:5690432
  NCBI Gene: 115490428
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:108495986-108509763 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  457 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690432	lncRNA gene	Chr6:108495986-108509870 (-)
129S1/SvImJ	ENSMUSG00200026013	lncRNA gene	Chr6:105520442-105527151 (-)
A/J	ENSMUSG00195017049	lncRNA gene	Chr6:105155503-105162158 (-)
AKR/J	ENSMUSG00220035810	lncRNA gene	Chr6:104065154-104071805 (-)
BALB/cJ	ENSMUSG00180002371	lncRNA gene	Chr6:105528628-105535280 (-)
C3H/HeJ	ENSMUSG00175017256	lncRNA gene	Chr6:71868824-71875475 (+)
C57BL/6NJ	ENSMUSG00215024855	lncRNA gene	Chr6:105565674-105572332 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003912	antisense lncRNA gene	Chr6:103886157-103892755 (-)
CAST/EiJ	ENSTCUG00005030343	lncRNA gene	Chr6:105442396-105449117 (-)
CBA/J	ENSMUSG00210020906	lncRNA gene	Chr6:105385516-105392167 (-)
DBA/2J	ENSMUSG00185018902	lncRNA gene	Chr6:105834218-105840888 (-)
FVB/NJ	ENSMUSG00205028957	lncRNA gene	Chr6:104471559-104478276 (-)
JF1/MsJ	ENSUMUG00000032589	lncRNA gene	Chr6:104589049-104595727 (-)
LP/J	ENSMUSG00230002008	lncRNA gene	Chr6:107026846-107033555 (-)
NOD/ShiLtJ	ENSMUSG00190018409	lncRNA gene	Chr6:105000221-105006879 (-)
NZO/HlLtJ	ENSMUSG00225005673	lncRNA gene	Chr6:108966994-108973653 (-)
PWK/PhJ	ENSLUMG00010027884	lncRNA gene	Chr6:104083602-104090272 (-)
SPRET/EiJ	ENSMSPG00010014754	lncRNA gene	Chr6:106681520-106687683 (-)
WSB/EiJ	ENSIUOG00005025233	lncRNA gene	Chr6:105792782-105799464 (-)

Homology

• Gene Tree
  Gm44040
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000107458 (Evidence)
• NCBI Gene
  115490428

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107458	Ensembl Gene Model | MGI Sequence Detail	13778	C57BL/6J
transcript	ENSMUST00000365614	Ensembl | MGI Sequence Detail	679	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm44040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62388	Chr6:108509748-108509767 (-)	5 bp
Tssr62387	Chr6:108509586-108509607 (-)	166 bp