Gm44020 Gene Detail

Summary

• Symbol
  Gm44020
• Name
  predicted gene, 44020
• Synonyms
  Gm36478

• Feature Type
  lncRNA gene
• IDs
  MGI:5690412
  NCBI Gene: 102640413
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:148260293-148263611 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6,
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690412	lncRNA gene	Chr6:148260115-148269897 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004399	antisense lncRNA gene	Chr6:153434376-153437696 (+)
A/J	MGP_AJ_G0004376	antisense lncRNA gene	Chr6:147347894-147351214 (+)
AKR/J	MGP_AKRJ_G0004358	antisense lncRNA gene	Chr6:151741330-151744650 (+)
BALB/cJ	MGP_BALBcJ_G0004362	antisense lncRNA gene	Chr6:147113504-147116824 (+)
C3H/HeJ	MGP_C3HHeJ_G0004311	antisense lncRNA gene	Chr6:151793938-151797256 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004512	antisense lncRNA gene	Chr6:157506040-157509358 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003971	antisense lncRNA gene	Chr6:146078516-146081909 (+)
CAST/EiJ	MGP_CASTEiJ_G0004271	antisense lncRNA gene	Chr6:151451500-151454818 (+)
CBA/J	MGP_CBAJ_G0004305	antisense lncRNA gene	Chr6:163571881-163575201 (+)
DBA/2J	MGP_DBA2J_G0004320	antisense lncRNA gene	Chr6:146144466-146147784 (+)
FVB/NJ	MGP_FVBNJ_G0004338	antisense lncRNA gene	Chr6:144840311-144843626 (+)
LP/J	MGP_LPJ_G0004400	antisense lncRNA gene	Chr6:153552398-153555708 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004329	antisense lncRNA gene	Chr6:167208571-167211891 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004510	antisense lncRNA gene	Chr6:151583934-151587252 (+)
PWK/PhJ	MGP_PWKPhJ_G0004224	antisense lncRNA gene	Chr6:144648800-144652104 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004166	antisense lncRNA gene	Chr6:149698397-149701689 (+)
WSB/EiJ	MGP_WSBEiJ_G0004310	antisense lncRNA gene	Chr6:152190516-152193832 (+)

Homology

• Gene Tree
  Gm44020
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108148 (Evidence)
• NCBI Gene
  102640413

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108148	Ensembl Gene Model | MGI Sequence Detail	3319	C57BL/6J
transcript	ENSMUST00000204618	Ensembl | MGI Sequence Detail	664	Not Applicable

Other
Accession IDs

MGI:5595637

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;