Gm44017 Gene Detail

Summary

• Symbol
  Gm44017
• Name
  predicted gene, 44017

• Feature Type
  lncRNA gene
• IDs
  MGI:5690409
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:134666822-134668265 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690409	lncRNA gene	Chr6:134666822-134668265 (+)
129S1/SvImJ	ENSMUSG00200046862	lncRNA gene	Chr6:132162179-132163622 (+)
129S1/SvImJ	ENSMUSG00200028720	lncRNA gene	Chr15:35618608-35620052 (+)
129S1/SvImJ	ENSMUSG00200020031	lncRNA gene	Chr14:83550358-83551802 (-)
A/J	ENSMUSG00195033336	lncRNA gene	Chr6:131024631-131024639 (+)
AKR/J	ENSMUSG00220042655	lncRNA gene	Chr6:129249044-129249052 (+)
BALB/cJ	ENSMUSG00180042130	lncRNA gene	Chr6:131096614-131096622 (+)
C3H/HeJ	ENSMUSG00175043123	lncRNA gene	Chr6:131045004-131045012 (+)
C57BL/6NJ	ENSMUSG00215040742	lncRNA gene	Chr14:36866686-36868128 (-)
C57BL/6NJ	ENSMUSG00215014693	lncRNA gene	Chr1:121491761-121493197 (-)
C57BL/6NJ	ENSMUSG00215000681	lncRNA gene	Chr3:45816540-45817985 (+)
C57BL/6NJ	ENSMUSG00215036899	lncRNA gene	Chr6:131286526-131287969 (+)
C57BL/6NJ	ENSMUSG00215011804	lncRNA gene	Chr11:28453704-28455147 (+)
C57BL/6NJ	ENSMUSG00215021675	lncRNA gene	Chr14:83276251-83277695 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042181	lncRNA gene	Chr6:131950886-131950894 (+)
CBA/J	ENSMUSG00210017275	lncRNA gene	Chr6:131063472-131063480 (+)
DBA/2J	ENSMUSG00185022966	lncRNA gene	Chr6:131759654-131759662 (+)
FVB/NJ	ENSMUSG00205043110	lncRNA gene	Chr6:130188574-130188582 (+)
JF1/MsJ	ENSUMUG00000000804	lncRNA gene	Chr2:43417358-43418802 (-)
JF1/MsJ	ENSUMUG00000002947	lncRNA gene	Chr4:29368926-29370371 (+)
JF1/MsJ	ENSUMUG00000016864	lncRNA gene	Chr16:61612528-61613970 (+)
JF1/MsJ	ENSUMUG00000025868	lncRNA gene	Chr13:15148420-15149859 (+)
JF1/MsJ	ENSUMUG00000003897	lncRNA gene	Chr5:19492929-19494378 (-)
JF1/MsJ	ENSUMUG00000043304	lncRNA gene	Chr6:130502605-130504048 (+)
JF1/MsJ	ENSUMUG00000024851	lncRNA gene	Chr5:67614993-67616438 (+)
JF1/MsJ	ENSUMUG00000051550	lncRNA gene	Chr9:12746620-12748056 (+)
JF1/MsJ	ENSUMUG00000011529	lncRNA gene	ChrX:135292539-135293983 (+)
LP/J	ENSMUSG00230013391	lncRNA gene	Chr15:38999673-39001117 (+)
LP/J	ENSMUSG00230053569	lncRNA gene	Chr14:53851351-53852793 (-)
LP/J	ENSMUSG00230005462	lncRNA gene	Chr14:100815969-100817413 (-)
LP/J	ENSMUSG00230009665	lncRNA gene	Chr6:132958030-132959473 (+)
LP/J	ENSMUSG00230000573	lncRNA gene	Chr3:47685444-47686889 (+)
NOD/ShiLtJ	ENSMUSG00190043480	lncRNA gene	Chr6:131597912-131597920 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010042048	lncRNA gene	Chr6:129559620-129559628 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005048152	lncRNA gene	Chr6:131861940-131861948 (+)

Homology

• Gene Tree
  Gm44017
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37

• Ensembl
  ENSMUSG00000108166 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108166	Ensembl Gene Model | MGI Sequence Detail	1444	C57BL/6J
transcript	ENSMUST00000203231	Ensembl | MGI Sequence Detail	740	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;