Gm44012 Gene Detail

Summary

• Symbol
  Gm44012
• Name
  predicted gene, 44012

• Feature Type
  lncRNA gene
• IDs
  MGI:5690404
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:84898105-84901978 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690404	lncRNA gene	Chr6:84898105-84901978 (+)
129S1/SvImJ	ENSMUSG00200012775	lncRNA gene	Chr6:81861795-81865668 (+)
A/J	ENSMUSG00195012574	lncRNA gene	Chr6:81546106-81549979 (+)
AKR/J	ENSMUSG00220002114	lncRNA gene	Chr6:80509142-80513017 (+)
BALB/cJ	ENSMUSG00180010075	lncRNA gene	Chr6:81923551-81927424 (+)
C3H/HeJ	ENSMUSG00175039798	lncRNA gene	Chr6:95479299-95483172 (-)
C57BL/6NJ	ENSMUSG00215019184	lncRNA gene	Chr6:81919181-81923055 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008626	lncRNA gene	Chr6:81912664-81916537 (+)
CBA/J	ENSMUSG00210011647	lncRNA gene	Chr6:81737335-81741208 (+)
DBA/2J	ENSMUSG00185047504	lncRNA gene	Chr6:82284458-82288331 (+)
FVB/NJ	ENSMUSG00205029457	lncRNA gene	Chr6:80977149-80981022 (+)
JF1/MsJ	ENSUMUG00000022968	lncRNA gene	Chr6:81321954-81325805 (+)
LP/J	ENSMUSG00230050738	lncRNA gene	Chr6:83418558-83422431 (+)
NOD/ShiLtJ	ENSMUSG00190001955	lncRNA gene	Chr6:81361154-81365029 (+)
NZO/HlLtJ	ENSMUSG00225020603	lncRNA gene	Chr6:85332694-85336567 (+)
PWK/PhJ	ENSLUMG00010006866	lncRNA gene	Chr6:80681264-80685093 (+)
SPRET/EiJ	ENSMSPG00010046159	lncRNA gene	Chr6:82820855-82823735 (+)
WSB/EiJ	ENSIUOG00005019650	lncRNA gene	Chr6:82300283-82304166 (+)

Homology

• Gene Tree
  Gm44012
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm44012
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108012 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108012	Ensembl Gene Model | MGI Sequence Detail	3874	C57BL/6J
transcript	ENSMUST00000204154	Ensembl | MGI Sequence Detail	424	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48