Gm43985 Pseudogene Detail

Summary

• Symbol
  Gm43985
• Name
  predicted gene, 43985

• Feature Type
  pseudogene
• IDs
  MGI:5690377
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:82967804-82968560 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690377	pseudogene	Chr6:82967804-82968560 (-)
129S1/SvImJ	ENSMUSG00200012327	pseudogene	Chr6:79929799-79930555 (-)
A/J	ENSMUSG00195012290	pseudogene	Chr6:79613968-79614724 (-)
AKR/J	ENSMUSG00220002204	pseudogene	Chr6:78557399-78558155 (-)
BALB/cJ	ENSMUSG00180010190	pseudogene	Chr6:79989973-79990729 (-)
C3H/HeJ	ENSMUSG00175038718	pseudogene	Chr6:97419463-97420219 (+)
C57BL/6NJ	ENSMUSG00215016130	pseudogene	Chr6:79987278-79988034 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011962	pseudogene	Chr6:79140602-79141508 (-)
CAST/EiJ	ENSTCUG00005008375	pseudogene	Chr6:80000341-80001097 (-)
CBA/J	ENSMUSG00210011421	pseudogene	Chr6:79805668-79806424 (-)
DBA/2J	ENSMUSG00185001090	pseudogene	Chr6:80352717-80353473 (-)
FVB/NJ	ENSMUSG00205028469	pseudogene	Chr6:79031673-79032429 (-)
JF1/MsJ	ENSUMUG00000024053	pseudogene	Chr6:79406043-79406794 (-)
LP/J	ENSMUSG00230050608	pseudogene	Chr6:81487085-81487841 (-)
NOD/ShiLtJ	ENSMUSG00190001643	pseudogene	Chr6:79434843-79435599 (-)
NZO/HlLtJ	ENSMUSG00225021562	pseudogene	Chr6:83402689-83403440 (-)
PWK/PhJ	ENSLUMG00010006329	pseudogene	Chr6:78756882-78757633 (-)
SPRET/EiJ	ENSMSPG00010042334	pseudogene	Chr6:80910683-80911441 (-)
WSB/EiJ	ENSIUOG00005019497	pseudogene	Chr6:80372582-80373338 (-)

Homology

• Gene Tree
  Gm43985
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43985
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107829 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107829	Ensembl Gene Model | MGI Sequence Detail	757	C57BL/6J
transcript	ENSMUST00000203283	Ensembl | MGI Sequence Detail	757	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48