Gm43972 Gene Detail

Summary

• Symbol
  Gm43972
• Name
  predicted gene, 43972

• Feature Type
  lncRNA gene
• IDs
  MGI:5690364
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:25864807-25866273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690364	lncRNA gene	Chr5:25864807-25866273 (+)
129S1/SvImJ	ENSMUSG00200014666	lncRNA gene	Chr5:21468373-21469943 (+)
A/J	ENSMUSG00195050027	lncRNA gene	Chr5:20931133-20932599 (+)
AKR/J	ENSMUSG00220009590	lncRNA gene	Chr5:21024657-21026122 (+)
BALB/cJ	ENSMUSG00180037210	lncRNA gene	Chr5:20810968-20812436 (+)
C3H/HeJ	ENSMUSG00175048108	lncRNA gene	Chr5:22739865-22741333 (+)
C57BL/6NJ	ENSMUSG00215042183	lncRNA gene	Chr5:21384505-21385972 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005997	lincRNA gene	Chr5:20557836-20559295 (+)
CAST/EiJ	ENSTCUG00005024724	lncRNA gene	Chr5:20938697-20940300 (+)
CBA/J	ENSMUSG00210048910	lncRNA gene	Chr5:21768566-21770033 (+)
DBA/2J	ENSMUSG00185037962	lncRNA gene	Chr5:23298944-23300390 (+)
FVB/NJ	ENSMUSG00205034722	lncRNA gene	Chr5:20583715-20585181 (+)
JF1/MsJ	ENSUMUG00000007045	lncRNA gene	Chr5:27868579-27870029 (+)
LP/J	ENSMUSG00230025933	lncRNA gene	Chr5:27750319-27751869 (+)
NOD/ShiLtJ	ENSMUSG00190015831	lncRNA gene	Chr5:20855919-20857365 (+)
NZO/HlLtJ	ENSMUSG00225020573	lncRNA gene	Chr5:33152303-33153749 (+)
PWK/PhJ	ENSLUMG00010048450	lncRNA gene	Chr5:20912597-20914050 (+)
SPRET/EiJ	ENSMSPG00010043648	lncRNA gene	Chr5:21776007-21777481 (+)
WSB/EiJ	ENSIUOG00005043873	lncRNA gene	Chr5:23665792-23667238 (+)

Homology

• Gene Tree
  Gm43972
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106144 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106144	Ensembl Gene Model | MGI Sequence Detail	1467	C57BL/6J
transcript	ENSMUST00000181398	Ensembl | MGI Sequence Detail	1467	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;