Gm43960 Pseudogene Detail

Summary

• Symbol
  Gm43960
• Name
  predicted gene, 43960

• Feature Type
  pseudogene
• IDs
  MGI:5690352
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:10804828-10809847 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  289 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690352	pseudogene	Chr6:10804828-10809847 (+)
129S1/SvImJ	ENSMUSG00200001911	pseudogene	Chr6:7821864-7826867 (+)
A/J	ENSMUSG00195002019	pseudogene	Chr6:7751145-7756149 (+)
AKR/J	ENSMUSG00220021654	pseudogene	Chr6:7356465-7361469 (+)
BALB/cJ	ENSMUSG00180001623	pseudogene	Chr6:7898137-7903158 (+)
C3H/HeJ	ENSMUSG00175007439	pseudogene	Chr6:7738206-7743226 (+)
C57BL/6NJ	ENSMUSG00215014456	pseudogene	Chr6:7862964-7867983 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026476	pseudogene	Chr6:7671227-7676233 (+)
CBA/J	ENSMUSG00210021388	pseudogene	Chr6:7669893-7674910 (+)
DBA/2J	ENSMUSG00185026175	pseudogene	Chr6:7836872-7841875 (+)
FVB/NJ	ENSMUSG00205015676	pseudogene	Chr6:7836148-7841152 (+)
JF1/MsJ	ENSUMUG00000012869	pseudogene	Chr6:7791417-7796399 (+)
LP/J	ENSMUSG00230018172	pseudogene	Chr6:8840545-8845549 (+)
NOD/ShiLtJ	ENSMUSG00190017350	pseudogene	Chr6:7576658-7581661 (+)
NZO/HlLtJ	ENSMUSG00225006293	pseudogene	Chr6:10684035-10689038 (+)
PWK/PhJ	ENSLUMG00010024201	pseudogene	Chr6:7545485-7550474 (+)
SPRET/EiJ	ENSMSPG00010002950	pseudogene	Chr6:7615163-7616947 (+)
WSB/EiJ	ENSIUOG00005004287	pseudogene	Chr6:7923757-7928752 (+)

Homology

• Gene Tree
  Gm43960
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108249 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108249	Ensembl Gene Model | MGI Sequence Detail	5020	C57BL/6J
transcript	ENSMUST00000204249	Ensembl | MGI Sequence Detail	5020	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;