Gm43959 Pseudogene Detail

Summary

• Symbol
  Gm43959
• Name
  predicted gene, 43959

• Feature Type
  pseudogene
• IDs
  MGI:5690351
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:85088675-85089251 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690351	pseudogene	Chr6:85088675-85089251 (+)
129S1/SvImJ	ENSMUSG00200012883	pseudogene	Chr6:82052704-82053281 (+)
A/J	ENSMUSG00195012517	pseudogene	Chr6:81737107-81737684 (+)
AKR/J	ENSMUSG00220002191	pseudogene	Chr6:80700065-80700642 (+)
BALB/cJ	ENSMUSG00180010439	pseudogene	Chr6:82114425-82115001 (+)
C3H/HeJ	ENSMUSG00175041872	pseudogene	Chr6:95291709-95292285 (-)
C57BL/6NJ	ENSMUSG00215015062	pseudogene	Chr6:82110090-82110666 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011970	pseudogene	Chr6:81258219-81258796 (+)
CAST/EiJ	ENSTCUG00005008557	pseudogene	Chr6:82103624-82104200 (+)
CBA/J	ENSMUSG00210011328	pseudogene	Chr6:81928235-81928811 (+)
DBA/2J	ENSMUSG00185046437	pseudogene	Chr6:82475367-82475943 (+)
FVB/NJ	ENSMUSG00205025852	pseudogene	Chr6:81168125-81168702 (+)
JF1/MsJ	ENSUMUG00000024611	pseudogene	Chr6:81531411-81531987 (+)
LP/J	ENSMUSG00230050963	pseudogene	Chr6:83609442-83610019 (+)
NOD/ShiLtJ	ENSMUSG00190043813	pseudogene	Chr6:81552151-81552728 (+)
NZO/HlLtJ	ENSMUSG00225020173	pseudogene	Chr6:85523654-85524231 (+)
PWK/PhJ	ENSLUMG00010006274	pseudogene	Chr6:80881359-80881935 (+)
SPRET/EiJ	ENSMSPG00010043418	pseudogene	Chr6:83019666-83020242 (+)
WSB/EiJ	ENSIUOG00005019252	pseudogene	Chr6:82491166-82491742 (+)

Homology

• Gene Tree
  Gm43959
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm43959
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107769 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107769	Ensembl Gene Model | MGI Sequence Detail	577	C57BL/6J
transcript	ENSMUST00000203740	Ensembl | MGI Sequence Detail	577	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48